LOC120575169 (rab37,LOC106606976,LOC106601425,LOC105012908,LOC108242943)


Basic Information

Item Value
gene id LOC120575169
gene name rab37,LOC106606976,LOC106601425,LOC105012908,LOC108242943
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8538590 ~ 8556285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825820.1
AAAGCTGAAGGAGAGGAAGTTTAAACATTTAGTTTATTTGCAGAAGCTCGTCTGCTTTTGAACAGAAAACGCGTTTAAACTAGAGGACAAACGAGATGGAGGACACCTGTGAAACGCAGAAGCAGGAGGAGGCGAAGCTGGTTTCCTCGGACAGTGCTTACGGGTCATCTGCCGTGGACACGGACACGGAGGACGGACAGACTCCCACGTCCAACACCTTCCCCTATAATGAAGACCTGACGCACAAGACCATTCTCGTGGGAGACAGCGGAGTGGGCAAGACCTCTCTGCTGGTTCAGTTCGACCAGGGCAAGTTCATCGCAGGGTCCTTCACCGCCACTGTCGGCATTGGTTTCACAAATAAAGTGGTGGATGTCGACAACCTGAAAGTCAAACTCCAGATCTGGGATACAGCTGGCCAAGAGAGATTCCGAAGCGTAACGCACGCCTACTACAGAGATGCCCAGGcGTTACTTTTGCTTTATGATATCACCAGCAAGCTGTCGTTTGACAATATCAGGGCTTGGCTGACTGAAATACACGAGTATGCCCAGAAGGATGTGGTCATCATGTTGCTCGGCAACAAGGCAGACATGGTTGCAGATAGGGTCGTGAAGAAGGAGGATGGAGAGAAGCTGGCGAAGGAGTATGGTGTACCATTTATGGAGACCAGTGCGAAGACAGGAGTCAATGTGGAGCTGGCCTTTCTTGCTATAGCAAAGGAGCTGAAGCACAGAGCGACACAGCAGCAGAATGAGCCCAAGTTCCAGATACACGACTACATCGAGTCTCAGAAGCACAAGTCTAGCTGCTGTGGACTCATGTAACTGATCCTGATCACCaggcagaaagagacacacagagagagagagagaaagaaagggaggcagggagggtGTAGGAacgagatatatatatatatatttaaaaaagtcagCTCTCTTACGAAAAAGCCAATGCCAGCACCAAACCTGAGAAGCAGACAACCTCGCCTTCTCCACTGAGCATTTAGCTCGAATGGAAAGTTAATCTGGATTGGCCGCCATCCCTTATCTAAAATGTGAATTTAAATCTATTTTATGTCATGCGTAGAAGTGTTTGTGGTCTTTGTGGTGACAGTTGTATTAAACTACAAGTCAGGAGTTGCAATCTGAAATGCTATATCCATCTGCAGGGACAAACATATATGTTTATCTTTCTATTCTGCATAGGTGGAAACTCAACATTTGGGAGTTTGGATGAAAAATATGGCACCCAAGTGATTTGTGCGGATCCAAAGAGTTTAATATTTGGGGAGAGGAGATGTTTGCGCTCCACATGGGCAGACACATTGCACTTAAAGGGTAACAACACCCTCAAATTCTGCTTGAACTTGGAGTGTCAGTACCAAATATCTATCAGTTTTCCATGGGCCCATGTGATGTGTTTACTGCCACTGAGGAGAAATAAATCTGGCTCATGCTAATGCTAGCAGGGGTCAACAAGCATAATACAACTCAGAGTTTTGTCTATTTTGTCACAGTTAAAGAGGAGCCAGAGAATACGGCTGAACCAAACATTCAAATCCGAGCAGACAGAAACATAATACCTGTATAAACATCATATGCCAACAAGAGTCTTTGTGATTTATGTGTACTGCACATAGTTCAGAACCCAGCTCGACTTCATAGTTTTCCGTTGCTGTTAAACCGAGCTTCAGTAACGTAACCTTGTCCACAGTGAGCTTAATTACTTGGGCTCTGTTTGGTCCTGCGGCAGAAACTGAAGTCCGGCCCTATTCTTAGAACtgtcgccttttttttttatcttgcagTTTACAGGCCCGACTTTTGATAAATGGCAGTTTTATATGAACAATCAATACGATTGTTGATGTCGATATAGCATTTTGCCCTGCAGCTCTTACTTTGTTTCTATCCCTGTTTGACCAGGCTGTGAACTGAATCTCTTTAGCCTGTTCTTTGATAATTTGTGTGCGTTTGAGAAGTGGACTTCAGTGTCACAGTCAGATTGTAGCTATAAAATGATTCCATCTGTTCACATCTGTACTGCTGTTAGATAGAATAAAGCCAACTTTTTAAGGGCGCTCGCccactgtgtgtctgtctgtactaCATTCAATTCAGGGCCACTGAAACTTCATTCAAAGTACTGTACATGTAATAGTGCTGGAGGATCATCCCAATGTTGCATCAGGCTTCACACAAAATGATAATTATCATTATTTTCACATCTTTGGTTCGAGATTCCTAAGCATGCTATTTGCCTtttagcattcacacacacagagggcacTCCCAAACATTGTTGCGTCTCCTTTAACGATGGATGTTGTTGTACCGAAGCTGTATTTGCTCACGCATCGTGTAACTTGTTTCTTTGTACAATGTTCATTATGAATTGCTCGATGTCACATTTGTCCCTCTTCTGAGGCGTCACGGTGGGAGTGTCACAAAGTGCCATGAAAAAGTGCTTTGTTATCATGTTGtataaaaaaagtatattttgtaatgta
>XM_039825821.1
tgTTAGAGCTGTCGGCATCCTCTGCGTGCTCAGATAACCACCTGGCCACACCAGGACGCAGAGAAAGGTTTCCGCCTGCTAGTCATCACCGCTTTTCTTTGATTGGTGGATGCAGACGCCGATGCGCTGCCTGCCACTGATTGTTTTGCAAGTTTTTGAACTGTCGCATCCAGTGCGATATTAaaggtgtgattttttttctctctctctctctccccggaAAGCGCCTTTTGATCATTCTGTGGCCACGCGCAGTAATGCGAGCACAGGGGCTGGAGGCTGGCGGAGACCGGGACTGAGTGGCGGAGATCTCGCAGACACCGCGCGCGTCTTTCTTTGGACACATCTCGGAGATAACTGGGGCTTTGGCTTTTTCTTTAGCctgcgcttttttttttcttcttcctctccccttGACATTGCGATGTCCACAAGAAAGACATCGTTGACGGACAAGCAGGCTAAAAACGGAACCTCAAAATATGTGTTGGAGAGATGCGCTTCTGTTAACGAGTATTATGATGTTGCCTTCAAGGTGATGCTGCTGGGGGACTCGTCCGTGGGGAAGACGTGCGCCTTGGTGCGCTTTAAAGATGGGGCATTTCTGGGAGGCAACTTTATATCCACCGTTGGAATAGACTTTAGGAATAAAGTGGTGGATGTCGACAACCTGAAAGTCAAACTCCAGATCTGGGATACAGCTGGCCAAGAGAGATTCCGAAGCGTAACGCACGCCTACTACAGAGATGCCCAGGcGTTACTTTTGCTTTATGATATCACCAGCAAGCTGTCGTTTGACAATATCAGGGCTTGGCTGACTGAAATACACGAGTATGCCCAGAAGGATGTGGTCATCATGTTGCTCGGCAACAAGGCAGACATGGTTGCAGATAGGGTCGTGAAGAAGGAGGATGGAGAGAAGCTGGCGAAGGAGTATGGTGTACCATTTATGGAGACCAGTGCGAAGACAGGAGTCAATGTGGAGCTGGCCTTTCTTGCTATAGCAAAGGAGCTGAAGCACAGAGCGACACAGCAGCAGAATGAGCCCAAGTTCCAGATACACGACTACATCGAGTCTCAGAAGCACAAGTCTAGCTGCTGTGGACTCATGTAACTGATCCTGATCACCaggcagaaagagacacacagagagagagagagaaagaaagggaggcagggagggtGTAGGAacgagatatatatatatatatttaaaaaagtcagCTCTCTTACGAAAAAGCCAATGCCAGCACCAAACCTGAGAAGCAGACAACCTCGCCTTCTCCACTGAGCATTTAGCTCGAATGGAAAGTTAATCTGGATTGGCCGCCATCCCTTATCTAAAATGTGAATTTAAATCTATTTTATGTCATGCGTAGAAGTGTTTGTGGTCTTTGTGGTGACAGTTGTATTAAACTACAAGTCAGGAGTTGCAATCTGAAATGCTATATCCATCTGCAGGGACAAACATATATGTTTATCTTTCTATTCTGCATAGGTGGAAACTCAACATTTGGGAGTTTGGATGAAAAATATGGCACCCAAGTGATTTGTGCGGATCCAAAGAGTTTAATATTTGGGGAGAGGAGATGTTTGCGCTCCACATGGGCAGACACATTGCACTTAAAGGGTAACAACACCCTCAAATTCTGCTTGAACTTGGAGTGTCAGTACCAAATATCTATCAGTTTTCCATGGGCCCATGTGATGTGTTTACTGCCACTGAGGAGAAATAAATCTGGCTCATGCTAATGCTAGCAGGGGTCAACAAGCATAATACAACTCAGAGTTTTGTCTATTTTGTCACAGTTAAAGAGGAGCCAGAGAATACGGCTGAACCAAACATTCAAATCCGAGCAGACAGAAACATAATACCTGTATAAACATCATATGCCAACAAGAGTCTTTGTGATTTATGTGTACTGCACATAGTTCAGAACCCAGCTCGACTTCATAGTTTTCCGTTGCTGTTAAACCGAGCTTCAGTAACGTAACCTTGTCCACAGTGAGCTTAATTACTTGGGCTCTGTTTGGTCCTGCGGCAGAAACTGAAGTCCGGCCCTATTCTTAGAACtgtcgccttttttttttatcttgcagTTTACAGGCCCGACTTTTGATAAATGGCAGTTTTATATGAACAATCAATACGATTGTTGATGTCGATATAGCATTTTGCCCTGCAGCTCTTACTTTGTTTCTATCCCTGTTTGACCAGGCTGTGAACTGAATCTCTTTAGCCTGTTCTTTGATAATTTGTGTGCGTTTGAGAAGTGGACTTCAGTGTCACAGTCAGATTGTAGCTATAAAATGATTCCATCTGTTCACATCTGTACTGCTGTTAGATAGAATAAAGCCAACTTTTTAAGGGCGCTCGCccactgtgtgtctgtctgtactaCATTCAATTCAGGGCCACTGAAACTTCATTCAAAGTACTGTACATGTAATAGTGCTGGAGGATCATCCCAATGTTGCATCAGGCTTCACACAAAATGATAATTATCATTATTTTCACATCTTTGGTTCGAGATTCCTAAGCATGCTATTTGCCTtttagcattcacacacacagagggcacTCCCAAACATTGTTGCGTCTCCTTTAACGATGGATGTTGTTGTACCGAAGCTGTATTTGCTCACGCATCGTGTAACTTGTTTCTTTGTACAATGTTCATTATGAATTGCTCGATGTCACATTTGTCCCTCTTCTGAGGCGTCACGGTGGGAGTGTCACAAAGTGCCATGAAAAAGTGCTTTGTTATCATGTTGtataaaaaaagtatattttgtaatgta

Function

symbol description
rab37 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein transport. Located in endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
PREDICTED: ras-related protein Rab-37-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07914 RAB37; Ras-related protein Rab-37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825820.1 False 2515 mRNA 0.44 9 8538590 8556285
XM_039825821.1 True 2802 mRNA 0.45 9 8544433 8556285

Neighbor

gene id symbol gene type direction distance location
xylt2 xylt2 coding upstream 611 8523129 ~ 8537979 (+)
arhgdia arhgdia,LOC107372410,LOC107087451,LOC103153321 coding upstream 66178 8455189 ~ 8472412 (+)
alyref alyref coding upstream 85511 8449968 ~ 8453079 (+)
LOC120573853 LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802 coding upstream 94211 8441188 ~ 8444379 (+)
pecam1 NA coding upstream 109761 8418841 ~ 8428829 (+)
LOC120574961 slc9a3r1,LOC103375212,LOC103393212,LOC102796138 coding downstream 1534 8557819 ~ 8588203 (+)
atp2a1 atp2a1,LOC102238060,LOC106906942,LOC106957433 coding downstream 45319 8601604 ~ 8626351 (+)
gdpd3a gdpd3,LOC104942728 coding downstream 129552 8685837 ~ 8694204 (+)
LOC120574773 LOC101066234,LOC101079871,LOC107557552,LOC106676044,LOC106920718 coding downstream 148335 8704620 ~ 8710204 (+)
atp6v0ca LOC101062972,LOC107376678,LOC100705449,LOC104942726,LOC107101194 coding downstream 156530 8712815 ~ 8719543 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding upstream 26796 8506326 ~ 8511794 (+)
LOC120575098 NA non-coding upstream 36686 8496347 ~ 8501904 (+)
G152942 NA non-coding upstream 151847 8386516 ~ 8386743 (+)
G152916 NA non-coding upstream 283780 8253522 ~ 8254810 (+)
G152826 NA non-coding upstream 425976 8112386 ~ 8112614 (+)
G152981 NA non-coding downstream 72423 8628708 ~ 8629645 (+)
G152990 NA non-coding downstream 90638 8646923 ~ 8647422 (+)
G152991 NA non-coding downstream 95333 8651618 ~ 8652838 (+)
G153005 NA non-coding downstream 147631 8703916 ~ 8704191 (+)
G153022 NA non-coding downstream 240221 8796506 ~ 8802661 (+)
mcrip1 mcrip1 other upstream 89285 8445420 ~ 8449305 (+)
G152892 NA other upstream 410609 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 1181752 7339985 ~ 7356838 (+)
dexi dexi,LOC107590611 other upstream 1263979 7270128 ~ 7274611 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 2581273 5950424 ~ 5957317 (+)
mapk3 mapk3,LOC104942729 other downstream 110185 8666470 ~ 8684765 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other downstream 140614 8696899 ~ 8701771 (+)
G153016 NA other downstream 200961 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 402963 8959248 ~ 8969045 (+)
asphd1 asphd1,LOC103374850,LOC102795844,LOC102314131 other downstream 480616 9036901 ~ 9042045 (+)

Expression


Co-expression Network