alyref (alyref)


Basic Information

Item Value
gene id alyref
gene name alyref
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8449968 ~ 8453079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825520.1
GGAGGTTGGCTTATTGTGTTTACTCGTCGTAGAAACTGTGAAGGGACAAGGAGAGGAAGCAATCGAGTCTAgggtgtatttcttttatatcgTTGGCAGTTTAGCATTATCGGGGCAGCATAATGGCCGATAAAATGGATATGTCTCTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGCGGTGGAAGAGGTCGAGGCCGCGGAGGCTCAGGTGGcggccgaggaggaggaggccctGGGCGTCTTGGAGTCAGCGGCGGCGGATTTGCAGGCCGAGGCGGCGGGTCCGGCCCCATGAGGAGCCGACAGAATCTGAGCCGCGGTAGAGGCAGACCAACGCCTTACAGCAGGCCTAAACAGCTTCCAGATAAGTGGCAGCATGACATGTTTGACAACGGCTTCAGTGGCTTCAGTGGCCCAGTCGGAGGTGGCGGAGGAGCTGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTCGACTTTGGGGTCTCAGATGCAGACATTCAGgAACTTTTTGCTGAATTTGGGACGCTGAAAAAGGCTGCAGTTCACTATGACCGATCGGGGCGGAGCCTGGGAACTGCAGATGTCCACTTTGAAAGAAGGGCAGATGCCCTTAAGGCCATGAAACAATACAATGGCATCCCACTTGATGgGCGGCCTATGAACATACAGCTCGTCACATCACAGATTGACACACAGAGGCGACCTATGCAGGGTCTGAACAGAGGCGGTGGAGGAGGCATGAACCGAAATCGTGGGGGTGGCTTCAGAGGCATGCAGAGAGGCCGCGGAGGACGTGGTGCAGGCGGTGCCGGGGGAAGAGGTCGGGGTGGCCGCGGCGGTAGTGGTAGCAAGCAGCAGCTGTCAGCAGAAGAACTCGACGCCCAGTTAGACGCCTACAATGCCAGGATGGACACCAGCTAAAAAATACAGTTCCTCTGGATTGTTGTCCCTTCCTGTCTGCACAGAAGGGTGGTTGTGACAGATGTGCAGAATATTTTACACATGGTTGTCTTCTGATGTGATTTGAAATTATTGTTCCAACCTCTTCTTTTAAATGCTCCGTTTTTTACCAGTACttgattatttttgttttttctgacgAAAAATGGTTTTGGCTGTAGGTTAATGTGAATTGGGTTTTCCCAGTTCTTTTCTCTACCCTGTAGTTAATGACACTTGTATTAAAACCTACAGTGAATATTAACCAAA

Function

symbol description
alyref Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor).

NR:

description
THO complex subunit 4 isoform X1

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12881 THOC4, ALY; THO complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825520.1 True 1232 mRNA 0.52 6 8449968 8453079

Neighbor

gene id symbol gene type direction distance location
LOC120573853 LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802 coding upstream 5589 8441188 ~ 8444379 (+)
pecam1 NA coding upstream 21139 8418841 ~ 8428829 (+)
LOC120574874 LOC108243002,LOC102310090,LOC106516502,LOC103375333 coding upstream 197661 8236142 ~ 8252307 (+)
LOC120575181 LOC100708112,LOC103375341,LOC102791385,LOC101480711,LOC102216199 coding upstream 239563 8149353 ~ 8210405 (+)
LOC120574676 LOC100700674,LOC104966931,LOC106533983,LOC101072238,LOC103375364 coding upstream 337911 8102205 ~ 8112057 (+)
arhgdia arhgdia,LOC107372410,LOC107087451,LOC103153321 coding downstream 2110 8455189 ~ 8472412 (+)
xylt2 xylt2 coding downstream 70050 8523129 ~ 8537979 (+)
LOC120575169 rab37,LOC106606976,LOC106601425,LOC105012908,LOC108242943 coding downstream 85511 8538590 ~ 8556285 (+)
LOC120574961 slc9a3r1,LOC103375212,LOC103393212,LOC102796138 coding downstream 104740 8557819 ~ 8588203 (+)
atp2a1 atp2a1,LOC102238060,LOC106906942,LOC106957433 coding downstream 148525 8601604 ~ 8626351 (+)
G152942 NA non-coding upstream 63225 8386516 ~ 8386743 (+)
G152916 NA non-coding upstream 195158 8253522 ~ 8254810 (+)
G152826 NA non-coding upstream 337354 8112386 ~ 8112614 (+)
G152823 NA non-coding upstream 357762 8088994 ~ 8092206 (+)
LOC120575520 NA non-coding upstream 376663 8073236 ~ 8073305 (+)
LOC120575098 NA non-coding downstream 43268 8496347 ~ 8501904 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding downstream 53247 8506326 ~ 8511794 (+)
G152981 NA non-coding downstream 175629 8628708 ~ 8629645 (+)
G152990 NA non-coding downstream 193844 8646923 ~ 8647422 (+)
G152991 NA non-coding downstream 198539 8651618 ~ 8652838 (+)
mcrip1 mcrip1 other upstream 663 8445420 ~ 8449305 (+)
G152892 NA other upstream 321987 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 1093130 7339985 ~ 7356838 (+)
dexi dexi,LOC107590611 other upstream 1175357 7270128 ~ 7274611 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 2492651 5950424 ~ 5957317 (+)
mapk3 mapk3,LOC104942729 other downstream 213391 8666470 ~ 8684765 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other downstream 243820 8696899 ~ 8701771 (+)
G153016 NA other downstream 304167 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 506169 8959248 ~ 8969045 (+)
asphd1 asphd1,LOC103374850,LOC102795844,LOC102314131 other downstream 583822 9036901 ~ 9042045 (+)

Expression


Co-expression Network