LOC120573853 (LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802)


Basic Information

Item Value
gene id LOC120573853
gene name LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8441188 ~ 8444379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823720.1
GCCCCACCAGACAACGATTCTGCGCAACAGCAAACACACTGTGCAAAAgatcattttaaatttaattggGAGAAATTCAcagcaagtgaaaaaaaaaaaaaaaagaggaccaTACAAGCTAAAAGAAGGTGACTGGATCATAGTGAAGCAAAGGATTTGAGAAGTAGTTTGCAGTAACAGCAGGAGCTACTCCAGCTGGGAGCTAAAGGGCTAAGAAGCGAGCGAGGAGAGGACACCAAGGACACAGAGCAAAGGATACTGCTCTTTTATTGGATTGGTGCGTTCTCTTGGATTTCTCCCTTCCCTCCTCCTGGGCTGACAGCATAGGGGGGAGGCAGAGCCGCAACCACCGCAGGGATGAAGTACAACTACCATGTGCCGGCGTCGACGTACACACGCAGTTCACAGTACACACCAACATACAACACACCTAGCTATTACACTCCCTCACATTACACACCGTCTACACCGCACTACACCTCCGCATATACCTCTCTAACAAAGTACACCCCGACACAGTACAGCACGACGCATTACACCCCATCACAGTACACGTCCACTTACAAGGCTGCATCAACTTACATCCCCTCCTACAGCAAAGAGTCCCGGTACAGTTCTACACGCCgcacacaagaaaaaaaggaaaaccctGCACCTGTAATACCCGTCACACCTGCAAAGAGAACTGTGCACTTCCCCAATGACATCATCTTCCAGGATATTGTGAGACGAGGAGATATGGAGCAAATTGGTCGGTTCATGAGAGCGAGGAAGGTTCGTGTGGATACGCTCTTCCACTCAGGTATGGCAGCGCTACATGAAGCCGTGCTAACGGGAAACCTGGAGGTGGTGAAGCTGCTGGTGAAATATGGTGCTGATGTTCATCAGAGAGACGAAGATGGCTGGACGCCACTTCACATGGCCTGCAGTGACGGCTACCCGGAAATTGCCAGTTATCTGCTGTTGATGGGAGCCAGCACAGAGGCAGAGAACGAGAGCGGAGAGAAGCCTGCAGACCTCATCGACCCAGACTGCAAAGAGCTGGCCAAACTGTTTGAGACGGGCTGTGTGTGACTGGGCACCAAAGGGACCCAAAGTGAGACCACAGCAACAGAGAAGACGGAAAGCTTAGCAGTCActtggaaaagaaagaaaaacatatttaacagTATTAAACAGTGCAATACCAACCAAACTTGTAACAGGGTGGAAGAACATAGCCAGAGTTAGGACCACGTCACTGAACCTGTAAAGCAAAATGGTGGTTTGTTAgtttcaaaagtttttttttttttaatttgcagccTCAAAGCAATACCCCATTAGGCTGCATTTCTGTTGCTGGtggttatgttattttatttcattttactttgttttgcgcatttgtgtatttgtcaTACTGCCAGTGTCTATGCAAGAAATGTTAATCTGCGAACATCTGTCTTCACTCTCAGCTCATGTACAGTTGTACAATACCAGCAATGTCTCACCATGGTCCAGGTCTGAACACCTATTCATTTCTGAAGGAAATTAGATTAATCTACATCCTCCTGAGCATTTCGGTTTAAGTATTCTACcgattgtgttagtgtttagcaGTCACTTTTTAAGTAGCTGGTTGCACTCTACAGACAGTATGTTTTCAAACTGTGTATTGAATTTACAACACAGAATCTGAGCcgagatgtttgtgttttatagaCATAAAATGATGTATTATGTATTCTCACTGCTGGGCAGAAAGAGGATCAGCCAAATTAATAATTGATACTTCATTGATGGTcagaaatataattaaaaaaaaaacatcaagttGATGCTGTATAAGCTCTTTTACTGCTGCAGTATTTCCCCCTGATGTATTGCTTTTGTTTTCTGTAGTAGAAATACGAATGTCAGCAATGAAAGTCTTATAATTTTCTcctaattaattatttttgtacGTTTTCATAAATaaagaaaccttttataaa

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 27-like

GO: NA

KEGG:

id description
K17566 PPP1R27; protein phosphatase 1 regulatory subunit 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823720.1 True 1976 mRNA 0.43 3 8441188 8444379

Neighbor

gene id symbol gene type direction distance location
pecam1 NA coding upstream 12359 8418841 ~ 8428829 (+)
LOC120574874 LOC108243002,LOC102310090,LOC106516502,LOC103375333 coding upstream 188881 8236142 ~ 8252307 (+)
LOC120575181 LOC100708112,LOC103375341,LOC102791385,LOC101480711,LOC102216199 coding upstream 230783 8149353 ~ 8210405 (+)
LOC120574676 LOC100700674,LOC104966931,LOC106533983,LOC101072238,LOC103375364 coding upstream 329131 8102205 ~ 8112057 (+)
LOC120574880 NA coding upstream 408173 8016996 ~ 8033015 (+)
alyref alyref coding downstream 5589 8449968 ~ 8453079 (+)
arhgdia arhgdia,LOC107372410,LOC107087451,LOC103153321 coding downstream 10810 8455189 ~ 8472412 (+)
xylt2 xylt2 coding downstream 78750 8523129 ~ 8537979 (+)
LOC120575169 rab37,LOC106606976,LOC106601425,LOC105012908,LOC108242943 coding downstream 94211 8538590 ~ 8556285 (+)
LOC120574961 slc9a3r1,LOC103375212,LOC103393212,LOC102796138 coding downstream 113440 8557819 ~ 8588203 (+)
G152942 NA non-coding upstream 54445 8386516 ~ 8386743 (+)
G152916 NA non-coding upstream 186378 8253522 ~ 8254810 (+)
G152826 NA non-coding upstream 328574 8112386 ~ 8112614 (+)
G152823 NA non-coding upstream 348982 8088994 ~ 8092206 (+)
LOC120575520 NA non-coding upstream 367883 8073236 ~ 8073305 (+)
LOC120575098 NA non-coding downstream 51968 8496347 ~ 8501904 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding downstream 61947 8506326 ~ 8511794 (+)
G152981 NA non-coding downstream 184329 8628708 ~ 8629645 (+)
G152990 NA non-coding downstream 202544 8646923 ~ 8647422 (+)
G152991 NA non-coding downstream 207239 8651618 ~ 8652838 (+)
G152892 NA other upstream 313207 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 1084350 7339985 ~ 7356838 (+)
dexi dexi,LOC107590611 other upstream 1166577 7270128 ~ 7274611 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 2483871 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 2669321 5725886 ~ 5771867 (+)
mcrip1 mcrip1 other downstream 1041 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 222091 8666470 ~ 8684765 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other downstream 252520 8696899 ~ 8701771 (+)
G153016 NA other downstream 312867 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 514869 8959248 ~ 8969045 (+)

Expression


Co-expression Network