LOC120574874 (LOC108243002,LOC102310090,LOC106516502,LOC103375333)


Basic Information

Item Value
gene id LOC120574874
gene name LOC108243002,LOC102310090,LOC106516502,LOC103375333
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8236142 ~ 8252307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825361.1
GTTTGTCTGAAAAAGGCGGAGTTAACTATCTGTTACGGTAGTCTAACGGACGGTATCGTTTACATTTTTCGGGTTTACAATGCGGGAAACTACACTTTCCCTAGTCAGCTGGCGATTTGGATATTAATACACAGTTAGTTggggaagctaacgttacagtGACGCTAGTTGCCCGGATTCAAGACTGCTAGGCTCCCCGGGATACAGTTTCAACCATGGTGCAGGAATACCAGTCCCCTGTTCGGGTTTACAAGCATCCATTTGAGTTGATAATGGCGGCCTATGTGAGGAGGTTCCCAAAGTCCCACCTGATCCCAGTGTTTGTGGACAGTGAGATCCTCAGCGAGACCGAAAGCAAAGATGGATCCACGCTGGTAACTGAGAGGCGCTGTGTGATCGACATTGAGGCCCCACGTCTTCTTAAACGGATTGCTGGTGTAGACTACTTGTACTTTAGCCAAAAGAACACTCTGAATCGCAGAGACAGGACGCTCCGCATTGAGGTCCGCAACGAGACCTTTTCCAACAGGGTCCTTGTCCATGAGTGCTGCAACTACACGGTTCATCCGGAGAATGAGGACTGGACGTGCTTTGAGCAGACAGCTAGTTTGGATATTAAGTCCTTTTTTGGCTTTGAGAGCACGGCAGAGAAGATCGCTATGAAACAGTATGCTAGCAGCATTAAAAAGGGTAAAGAGATGATTGAGTACTACCTCAGAGAGCTGGAGGAAGAAGGAGTGACTTACATACCTCGTTGGAGCCCCCCTGTTGTCTCTGGCACTGCTGCTGCCAGGCTCCAGCTGCTGCCCTGCTGCACTGGCAGAGCCATCCCAGTGGACAGTGCCAAGACTGGACTAGACATTAAAGAACCGGCCGGTCCCACGGATCTAGTGGCTGGCTCTCCCGACGaCAAGTTGGATGCTGACTACATCAGACGTTACCTAGGTGATTTAACACCTCTGCAGGAGAGCTGTCTTATCCGACTGCGCCAGTGGCTCCAGGAAACCCACAAGGGAAAGATTCCAAAGGATCAGCATGTGCTACGCTTCCTGAGGGCCAGAGATTTCAACATGGACAAGGCCAGGGAGTTTTTGTGCCAGTCGCTTACCTGGAGGAAGCAACATAAGGTAGATTTCCTGTTAGACACGTGGGAGCGGCCACAACTGATTCTGGACTATTACACCGGCGGCTGGCACCACCACGACAGAGaCGGCCGTCCTCTGTATATCTTGCGCCTGGGGCAAATGGACACTAAGGGCTTGGTCCGCGCGTTGGGAATGGAAGCGCTTCTGAGACAGGTCCTGTCCATCAACGAGGAGGGACTGAGGCGTTGTGAAGAAAACACCAGAGTCTTCGGTCGACCCATTAGCTGCTGGACTTGCTTGGTGGATCTGGAGGGTCTTAACATGCGTCACCTGTGGAGGCCAGGTGTTAAGGCTCTGCTGAGAATCATCGAGGTGGTGGAGGCCAACTACCCCGAGACTCTGGGTCGCCTGCTCATACTGAGGGCGCCCAGAGTTTTCCCAGTGCTCTGGACCCTGGTCAGCCCCCTGATTGATGAGAATACCCGGAAGAAGTTCCTTGTTTACGCTGGAAACGACTACCAGGATCCAGGAGGATTGGTGGATTATATTGACAAAGAAGTCATTCCTGACTTCTTGGGAGGGGACTCCATGGGTGATATTCCTGAGGGAGGTACGGTCCCCAAATCTCTGTACAGGACAGCAGAAGAGCTGGAGAGTGAGGAAAACCGCCTGTTGACTGACTCCATCTATAAGAGTGCCAGTATTTTCAAGGGAGCCCCATATGAGATGCTGATCGAGATCACCGAGGCCTCCTCCGTCATCACCTGGGACTTCGACGTGTCTAAAGGAGATGTGATCTTCAACATCTACCATTCCAAGAGAGCCCCGCAGCCCCCTAAGAAAGACACTCTCGGTGCCCATGGCCTCACGTCCCCAGGGGCTGTTAACGCCCAGCTGATAGACAGGAGCTGGGTGCTGGGCCAGGACTACAGCATGGTGGAGAAAGCCCTCACctgcagggagggagagagtgtACAGGGCTCCCACGTAACCCGCTGGCCCGGCTTCTACATCCTCCAGTGGCGCTTCCACAGCTCCCCAGCCTGCTCCGCCTCCAGCCTGCCGCGTGTGGATGATGTGCTGGCCTCGCTGCAGGTCTCTTCGCACAAGTGTAAGATCATGTACTACACCGAGGTGCTGGGCTCCCATGACTTCAGGGGATCCATGACCAGTCTGGAGTCCAGTCATAGTGGTTTCTCCCAGCTCAGTGCAGCCACTACATCCTCTAGCCAATCACACGCCAGCTCCACTGTCTCAAGGTAGCATCTGCCCAGCAGGTGTCAAAAGACGGCAGTGACCTAATGACATCTTACTCCGACTGTGCCTTATACTCTCTCACTCTTTAATGACAATTTCACCTGACAATTGAAATGGAGGAGAGTATTATGGaaatgtttatatataaataaatgtttttattattttggtaGGAACAGTAAGGTTTCATTGAGCTCTCTTTCTCGGGAATtatgtatttatagtatcagtTTCCTGTCCACATGATAACTGacattttttctattttttttttttttttttttgaataatAGGAAGTGTCCAGTAAGAAATGTAATGCCTAGTGCACATGTCTAATATGGGATTTGTAGTTAAGGTATATGTGTGTCCGTGCATCTGCTGGATTAATACATGCCTAATGAGATGCCTCACAAACGGCAGCAGTTTCttcataaaatgaaatgagagattgaaagtaaaagtatttgtACAATGCACACAGCTTTAGTCCCCGAAGTTGCTTTCATCGTCCACAAGATGTCAGTGTACTCTGTGACTTTACCTGCTCTCAGATCTGCAGTTTACTcggcacatactgtacatttccaCTCACACTTTGTCTGGTCTTCGAAGAAATCAAAGGAagaattgttttaaataaagaatTTATCACAAGCATTAATATTGATGTAA

Function

NR:

description
PREDICTED: SEC14-like protein 1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825361.1 True 3014 mRNA 0.49 16 8236142 8252307

Neighbor

gene id symbol gene type direction distance location
LOC120575181 LOC100708112,LOC103375341,LOC102791385,LOC101480711,LOC102216199 coding upstream 25737 8149353 ~ 8210405 (+)
LOC120574676 LOC100700674,LOC104966931,LOC106533983,LOC101072238,LOC103375364 coding upstream 124085 8102205 ~ 8112057 (+)
LOC120574880 NA coding upstream 203127 8016996 ~ 8033015 (+)
grapa LOC103375418,LOC100690405,LOC101484535 coding upstream 223524 7975714 ~ 8012618 (+)
b9d1 b9d1 coding upstream 302685 7928919 ~ 7933457 (+)
pecam1 NA coding downstream 166534 8418841 ~ 8428829 (+)
LOC120573853 LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802 coding downstream 188881 8441188 ~ 8444379 (+)
alyref alyref coding downstream 197661 8449968 ~ 8453079 (+)
arhgdia arhgdia,LOC107372410,LOC107087451,LOC103153321 coding downstream 202882 8455189 ~ 8472412 (+)
xylt2 xylt2 coding downstream 270822 8523129 ~ 8537979 (+)
G152826 NA non-coding upstream 123528 8112386 ~ 8112614 (+)
G152823 NA non-coding upstream 143936 8088994 ~ 8092206 (+)
LOC120574886 NA non-coding upstream 162626 8071892 ~ 8073516 (+)
G152916 NA non-coding downstream 1215 8253522 ~ 8254810 (+)
G152942 NA non-coding downstream 134209 8386516 ~ 8386743 (+)
LOC120575098 NA non-coding downstream 244040 8496347 ~ 8501904 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding downstream 254019 8506326 ~ 8511794 (+)
G152981 NA non-coding downstream 376401 8628708 ~ 8629645 (+)
G152892 NA other upstream 108161 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 879304 7339985 ~ 7356838 (+)
dexi dexi,LOC107590611 other upstream 961531 7270128 ~ 7274611 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 2278825 5950424 ~ 5957317 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 2464275 5725886 ~ 5771867 (+)
mcrip1 mcrip1 other downstream 193113 8445420 ~ 8449305 (+)
mapk3 mapk3,LOC104942729 other downstream 414163 8666470 ~ 8684765 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other downstream 444592 8696899 ~ 8701771 (+)
G153016 NA other downstream 504939 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 706941 8959248 ~ 8969045 (+)

Expression


Co-expression Network