LOC120574961 (slc9a3r1,LOC103375212,LOC103393212,LOC102796138)


Basic Information

Item Value
gene id LOC120574961
gene name slc9a3r1,LOC103375212,LOC103393212,LOC102796138
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8557819 ~ 8588203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825488.1
TCTACTTTTCTCGCACAGTGAGAGGGAGCTGCTGTGTGACTCTAATCGGCCTCTATTCAGTCCTCGGGTCAGGACCTCCACTGTCTGATAGCAGGAGTCACAGTGAGGATTTACACAAGGGTGAGGATCAAGTCAGACTTGGACTCGTGTGTGTGAAAGTGGAACACCAGCACCGTTTCTCACGGACTAATCTCCCCAACAAGAGGGCGGgggttggaatttgtttttttaaggggtaccactcattcacacacacacacacccctccccaGCAGCATCCTGGAGCGGGTCTTGTGGTCATTTCCACTTTAAACAACAGTTTGAGACACAGTTCAGAAGCAGTGTGTGAAGGCGAGTGAAGCCTATATACCATGCCGAGCAAAAGCCAGCATCTGCGCCCCCGGCTCTGCACGCTGGAGAAGGGGGAGAACGGCTACGGCTTCCACCTCCACGGGGAGAAAGGCAAGACGGGGCAGTTTATCCGGTTAGTGGAGCCCGACAGCCCGGCTGAAACCTCGAGGCTCCGCGCCGGAGACCGGCTGGTGTTCGTCAACGGGGAGGACGTGGAGAACGAGAGCCACCAGCAGGTCGTGTCCCGGATACGAGCCACCGTGGGCCGGCTGGAGCTCGTAGTGGTGGACCCGGACACGGAGCAGCTGCTGAAGAAACACAACATGAAGTGTCTGAAGGAGTATGTCACTGACGGTATCCCGTTACCCTTCGAcgaggatgaggatgaggaggaggatgaggaggaggaggaggtggtggtggtggtggaggaggacgaggaggataGGGAGATGGACGGGACGGTAAACGGGGATGAGCAGCACATCAAGGGggatgaggatgaggagaaGCGGGAGGAGACACCCAGGGAGTCCACGCCGGTCCCGGAGAGTAACGGAGAAATCCACGTGCACGTCGAGAAAAAGCTGAGCATCAACTCTGAGAAGGAGGTGATGTGCACTGAACTGCGGCCACGTCTCTGTGTGATCCAGCGAGGGCCGAACGGATATGGCTTCAACCTGCACAGCGAGCGGGCGCGTCCGGGCCAGTACATCAGAGCTGTGGATGAAGACTCTCCAGCAGAGAGGGCAGGCCTGCTGTCCAAGGACAGGATAGTACAGGTGAACGGTCTGTCAGTAGAAGGGAAGACACATTCAGAAGTCGTGGCCGTCATTAAAGCCGGTGGGAGTGAAGCACGTCTGCTGGTGGTGGACCCTGACACAGACGCCTACTTCAAGAAGTGCCGAGTGGCCCCCACCTTGGACCACCTCACTGGTCCGCTGCCTGAGCCTGTGATTAACGGAGGAATGGAGGGGAAGGTGAATGGTAGAGGGGCCAAAGAGGCAGAGAGGGACTCAAAGCTGTCAGTCAGTCCTTCTCCATCCAATGCCTCGTCCAACACCTCGCTCACAACCCCGCCCGCTAACACCCCACCTGAGAGTTTCATCGCAGACGCCATCCCAGCGCTCAACCTGTCCCTGCAGCAGGTCAAAGAGCGCGCCCACCAGAAACGCTCCAACAAGAGAGCCCCGCCCATGGACTGGACCAAGAAAAATGAACTCTTCAGCAACCTATAGGACACCTCagctcaccacacacacacacacacacacacacacacacacacacacacacacacacacttacacacagatTTTATAGTGATTCTTACGAAGAGACAACAGaaagatattttttattgtcatgACATTAAAAGAGCAGTTTAACTAACTGGCACCGGACAAATCAAGCCTGTAAAATATAGTATTCTTCTTATTACTACTCTTCATGTTATTATAAAACagatattatatatgtataatgtGCTACTAACAAAGAAAAATGCATATGCCAATGAGAGAACTGGACCATGTTGacaatgtgtgtttgtattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggacccTGACAGTCCCTGCTGGCCAGAGTCTGGTGCCTGTGGAAACTAGGAGGAGTTGATCGTTATGCTCAGTTTATGCTCCTCCGTCTGCTTATCTGTCTCCTTTCTACTAACACTTAAAACATCGTAGTGTCTTCAACAACATGAGTTAAACCAACCTGACAATCAGTTAATTAATATCTCTAATTTAcctttttattagtttgttgGGATCAAACATATGACTGAACAGTAATGTTTTATTGGCGTAGATTCCAGTTTACACGGTAAAGTCCTTTCCTCACTGATGGCTTTAAACTGGAAAGAACTGTGTTTTAAATATGGTTCTCTTATGTATTGGTTATGTCTCTCtcatgtatattttttaattttttttacataaattccACTCTCTGAATTGAAAACGAGTTCAGCTTAATCGTTTCTTGCAACAGTACTATCCACACTTGTGTCTGAATACATGATATCATCTTTTATTAAATGTGAACTACAGTTTATTATGAGTAACTTATACCGTCCTCACTTTGCTATCCCGGCCGCTGTGAATGTTCAGTTCACAtatgaaatattttttattgctCCTGGAGAAATgagatttttacacatttctatCAATGTCTTAAAAACCATAATTATGTAACTTTGAGATGatgtatttcaaaaaaaaatgtctgtgctTCACTAGATTTATTGCATTTGTCCACTTTTGAGAATAGTgatttttcaaaatgaatgaTTTAATTATATGAAGAGTTTTGTTGTAGCTTATGTGTAAGAAGTAAGCAATTTCTATACTGTAATAAATCGGTCATcacaacaacatca

Function

symbol description
slc9a3r1 Enables several functions, including PDZ domain binding activity; beta-catenin binding activity; and signaling receptor binding activity. Involved in several processes, including establishment of Golgi localization; establishment or maintenance of epithelial cell apical/basal polarity; and regulation of signal transduction. Located in apical plasma membrane; microvillus; and perinuclear region of cytoplasm. Implicated in hypophosphatemic nephrolithiasis/osteoporosis 2.

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825488.1 True 2814 mRNA 0.48 6 8557819 8588203

Neighbor

gene id symbol gene type direction distance location
LOC120575169 rab37,LOC106606976,LOC106601425,LOC105012908,LOC108242943 coding upstream 1534 8538590 ~ 8556285 (+)
xylt2 xylt2 coding upstream 19840 8523129 ~ 8537979 (+)
arhgdia arhgdia,LOC107372410,LOC107087451,LOC103153321 coding upstream 85407 8455189 ~ 8472412 (+)
alyref alyref coding upstream 104740 8449968 ~ 8453079 (+)
LOC120573853 LOC102215035,LOC103153318,LOC103469130,LOC106961933,LOC106906802 coding upstream 113440 8441188 ~ 8444379 (+)
atp2a1 atp2a1,LOC102238060,LOC106906942,LOC106957433 coding downstream 13401 8601604 ~ 8626351 (+)
gdpd3a gdpd3,LOC104942728 coding downstream 97634 8685837 ~ 8694204 (+)
LOC120574773 LOC101066234,LOC101079871,LOC107557552,LOC106676044,LOC106920718 coding downstream 116417 8704620 ~ 8710204 (+)
atp6v0ca LOC101062972,LOC107376678,LOC100705449,LOC104942726,LOC107101194 coding downstream 124612 8712815 ~ 8719543 (+)
spsb3a spsb3,LOC104929506 coding downstream 134811 8723014 ~ 8730362 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding upstream 46025 8506326 ~ 8511794 (+)
LOC120575098 NA non-coding upstream 55915 8496347 ~ 8501904 (+)
G152942 NA non-coding upstream 171076 8386516 ~ 8386743 (+)
G152916 NA non-coding upstream 303009 8253522 ~ 8254810 (+)
G152826 NA non-coding upstream 445205 8112386 ~ 8112614 (+)
G152981 NA non-coding downstream 40505 8628708 ~ 8629645 (+)
G152990 NA non-coding downstream 58720 8646923 ~ 8647422 (+)
G152991 NA non-coding downstream 63415 8651618 ~ 8652838 (+)
G153005 NA non-coding downstream 115713 8703916 ~ 8704191 (+)
G153022 NA non-coding downstream 208303 8796506 ~ 8802661 (+)
mcrip1 mcrip1 other upstream 108514 8445420 ~ 8449305 (+)
G152892 NA other upstream 429838 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 1200981 7339985 ~ 7356838 (+)
dexi dexi,LOC107590611 other upstream 1283208 7270128 ~ 7274611 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other upstream 2600502 5950424 ~ 5957317 (+)
mapk3 mapk3,LOC104942729 other downstream 78267 8666470 ~ 8684765 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other downstream 108696 8696899 ~ 8701771 (+)
G153016 NA other downstream 169043 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 371045 8959248 ~ 8969045 (+)
asphd1 asphd1,LOC103374850,LOC102795844,LOC102314131 other downstream 448698 9036901 ~ 9042045 (+)

Expression


Co-expression Network