RNA id: XM_039825520.1


Basic Information

Item Value
RNA id XM_039825520.1
length 1232
RNA type mRNA
GC content 0.52
exon number 6
gene id alyref
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8449968 ~ 8453079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGTTGGCTTATTGTGTTTACTCGTCGTAGAAACTGTGAAGGGACAAGGAGAGGAAGCAATCGAGTCTAgggtgtatttcttttatatcgTTGGCAGTTTAGCATTATCGGGGCAGCATAATGGCCGATAAAATGGATATGTCTCTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGCGGTGGAAGAGGTCGAGGCCGCGGAGGCTCAGGTGGcggccgaggaggaggaggccctGGGCGTCTTGGAGTCAGCGGCGGCGGATTTGCAGGCCGAGGCGGCGGGTCCGGCCCCATGAGGAGCCGACAGAATCTGAGCCGCGGTAGAGGCAGACCAACGCCTTACAGCAGGCCTAAACAGCTTCCAGATAAGTGGCAGCATGACATGTTTGACAACGGCTTCAGTGGCTTCAGTGGCCCAGTCGGAGGTGGCGGAGGAGCTGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTCGACTTTGGGGTCTCAGATGCAGACATTCAGgAACTTTTTGCTGAATTTGGGACGCTGAAAAAGGCTGCAGTTCACTATGACCGATCGGGGCGGAGCCTGGGAACTGCAGATGTCCACTTTGAAAGAAGGGCAGATGCCCTTAAGGCCATGAAACAATACAATGGCATCCCACTTGATGgGCGGCCTATGAACATACAGCTCGTCACATCACAGATTGACACACAGAGGCGACCTATGCAGGGTCTGAACAGAGGCGGTGGAGGAGGCATGAACCGAAATCGTGGGGGTGGCTTCAGAGGCATGCAGAGAGGCCGCGGAGGACGTGGTGCAGGCGGTGCCGGGGGAAGAGGTCGGGGTGGCCGCGGCGGTAGTGGTAGCAAGCAGCAGCTGTCAGCAGAAGAACTCGACGCCCAGTTAGACGCCTACAATGCCAGGATGGACACCAGCTAAAAAATACAGTTCCTCTGGATTGTTGTCCCTTCCTGTCTGCACAGAAGGGTGGTTGTGACAGATGTGCAGAATATTTTACACATGGTTGTCTTCTGATGTGATTTGAAATTATTGTTCCAACCTCTTCTTTTAAATGCTCCGTTTTTTACCAGTACttgattatttttgttttttctgacgAAAAATGGTTTTGGCTGTAGGTTAATGTGAATTGGGTTTTCCCAGTTCTTTTCTCTACCCTGTAGTTAATGACACTTGTATTAAAACCTACAGTGAATATTAACCAAA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12881 THOC4, ALY; THO complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207157 lncRNA upstream 63225 8386516 ~ 8386743 (+) True G152942
TU207131 lncRNA upstream 195158 8253522 ~ 8254810 (+) True G152916
TU206999 lncRNA upstream 337354 8112386 ~ 8112614 (+) True G152826
TU206995 lncRNA upstream 357762 8088994 ~ 8092206 (+) False G152823
XR_005641949.1 lncRNA downstream 43268 8496347 ~ 8501904 (+) True LOC120575098
TU207190 lncRNA downstream 43434 8496513 ~ 8501898 (+) False LOC120575098
TU207193 lncRNA downstream 53247 8506326 ~ 8509364 (+) False G152973
TU207194 lncRNA downstream 53247 8506326 ~ 8511794 (+) True G152973
TU207204 lncRNA downstream 175629 8628708 ~ 8629645 (+) True G152981
XM_039826255.1 mRNA upstream 663 8445420 ~ 8449305 (+) True mcrip1
XM_039826256.1 mRNA upstream 663 8445428 ~ 8449305 (+) False mcrip1
XM_039823720.1 mRNA upstream 5589 8441188 ~ 8444379 (+) True LOC120573853
XM_039825862.1 mRNA upstream 21139 8418841 ~ 8428829 (+) False pecam1
XM_039825861.1 mRNA upstream 21139 8418842 ~ 8428829 (+) True pecam1
XM_039825034.1 mRNA downstream 2110 8455189 ~ 8472412 (+) True arhgdia
XM_039825329.1 mRNA downstream 70050 8523129 ~ 8537979 (+) True xylt2
XM_039825330.1 mRNA downstream 70050 8523129 ~ 8537979 (+) False xylt2
XM_039825820.1 mRNA downstream 85511 8538590 ~ 8556285 (+) False LOC120575169
XM_039825821.1 mRNA downstream 91354 8544433 ~ 8556285 (+) True LOC120575169
TU207168 other upstream 671 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 671 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 321987 8127265 ~ 8127981 (+) True G152892
XR_005642011.1 other upstream 376663 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 376887 8073008 ~ 8073081 (+) True LOC120575508
XR_005641904.1 other downstream 213391 8666470 ~ 8684765 (+) False mapk3
TU207220 other downstream 243889 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 304167 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 506169 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 608237 9061316 ~ 9067135 (+) True LOC120574330

Expression Profile