RNA id: XM_039825207.1


Basic Information

Item Value
RNA id XM_039825207.1
length 5517
RNA type mRNA
GC content 0.46
exon number 9
gene id mapk3
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8666470 ~ 8684765 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACGCTCCGCTCTGAGACCGAGACCAAATCCGTGCTCGCGCACGAAATCCATTTACACTCCAGTAGTAGAGAGGGCCCTGATCCAGTCGCTTTGCTCCGTAAATTAAACAATCCGTTCGGTTAAAGCCCCGCACAAACGGTAAAAACGTACTGAAAGCGGCGGCGGTCCCTCGGCGAATCACACTGACCGAGCAGGAGCGGTTTGGAGAGGAAGAATGGCGGATTCGAGCAGCACCGCAGCGGTCGGGGCCGCAGGCTCCAACAGCGCTGCTGCTGCCGGGGCGGCTGGCACGGTGGCGCAGGATGGAGCGCCCGCAGCTGCGGGACCCAAGGCCGAGTCTGTTAAGGGCCAGATTTTTGATGTGGGCCCCCGCTACACGAACCTGTCCTACATCGGGGAGGGGGCGTACGGAATGGTTTGCTCTGCTATGGACAACGTGACGAGCCAGCGCGTAGCCATCAAGAAAATCAGCCCATTTGAGCACCAGACGTACTGCCAGCGCACACTGAGGGAAATCAAGATCCTGCTGCGTTTCCACCATGAGAATATCATCGGCATCAACGACATTCTCAGGGCACGACACCTTGACAACATGAGGGATGTCTACATCGTGCAGACTCTGATGGAGACGGACCTGTACAAGCTGCTGAAGACCCAGAGGCTGAGCAACGACCACGTCTGCTATTTCCTCTACCAGATCCTGCGAGGCCTCAAGTACATTCACTCAGCCAACGTGTTGCACCGTGACCTCAAGCCCTCCAACCTGCTCATCAACACCACCTGCGACCTCaagATCTGTGACTTTGGCCTGGCACGGATAGCCGACCCCGAGCACGACCACACAGGTTTCTTGACCGAGTACGTGGCCACGCGTTGGTACAGGGCTCCAGAAATCATGCTCAACTCAAAGGGCTACTCCAAGTCTATTGACATCTGGTCAGTGGGCTGCATCTTGGCTGAGATGTTGTCCAACAGGCCTATCTTCCCCGGGAAACACTACTTGGACCAGCTCAACCACATACTGGGCGTCCTTGGCTCGCCTTCTCAAGATGATCTGAACTGCATTATCAACATGAAGGCGAGGAACTACCTGCAGTCCCTGCCTCATAAACCCAGGATCCCCTGGGAGAGTCTCTACAAGGCAGACTCAAAAGCTCTGGACCTGCTGGGACGCATGTTGACCTTTAACCCCGTGAAGCGCATCAGCGTTGAGGAGGCCCTGGCTCATCCTTACCTGGAGCAGTACTACGATCCCACAGATGAGCCGGTAGCAGAGGAGCCCTTCACTTTCTCCATGGAACTGGATGACCTTCCTAAGGAAAAGCTGAAGGAACTGATCTACGAGGAGACTGCTCGTTTCCAGGAAACCTACCAGGGCTCCTGAGACGCACAGccctaAAGAGTGACAAAGCCACACCGAGGCTTGGAACAAGAAGACCCCAACGACATGCTAAAACAAAACGAAAAATGCATCTTCAAGAAACcgacaaaaagagaaaacaagaaaTGAACATTTAACTGCTTATCTTTCTATTTCTACTGCAGGAGAGCtaagtttaactttttttctgtggtggggtggggtggggtggtaGGGTCTGTCGTACTCATGCTGTTTCAGTTTTAACCCTGTTGGACTCTCCATCCTCTTGCCTCACATTTAGTTTTCCCGTTAAAGGTCCTGCCTCATCCCGTCCCATTTACAGTAACTCACTGTGTCTCGCCTGTCCCGATCAGACCCCTTTTCCGCCTCTCTCCTGCAGCTGTTGCTGGAGCTCTCTCTGTTGCTCCCTCTCATATAAACTACTGTATTAACCAACACCATAACTCTCTTGTCTTGCACCATGTAAATTACAACCTGGAAAAATTTGAGGGCTAAAAGAACGGGGATGCTAAtcgggtgtatgtgtgtgtgtatatacaaaaatataaaagctTGTGCTCGTCTCAGTTTTTGTTTGTACACCGTTGTTCGAGTGTTTTCGGATCAGTCGTATCTGTATGTTTTGGGGTTTGTATTtgctagtcttttttttttttgaacactTGATTTTGAGACAAACATTCAATGTTTTTACTGGCATGTTGACAGGTTTATAGATAccattttttcttcttgtcgtcgctctttttcttttctttttctttttttaaaaaaacaacaacaaaaaactgtaTGATGTTCATATGAATGCATGCGTTCCTGAAATTAACCAAAGTGGCAGAGAGATGCAGGAAACTTGGCGGAGAAGCAACTAAGTAATATCTATAATCGTTTTGAATCGTACCTTAAACATATTTCTTGACCTGTAACTTGTACCAAGGACAGACTACCCCCTCCATTTGTGGAAAGTTGGTTATATTCAGGAGGCGCTACATGATTGGAACAAATGGAAATCAAACAGCCAAAAAATATAGTTTATATAATTGTGTATTGATTAAAATAACAGTGACACCTAGCCCCATTTTCCAGAACGTTCACGGTACTCTGTGCCATGTCAAAAcgttttttggtttttctgATGATCAGGAACTACCTGCCTTAATGTAAGTTTATACGGTGGAAGGATATCGGTATAACGTTACTGCATCGTCCACATTTTAGCCCCACAGCGTCCCTTtacaatgtaatacaaaatCAAATCGCTGATCCAGTGTCGGTATTACATTCCtatattaaattacatttctgCTACAAATGCATAGCAGTTGAATGGTGAACTACTTGTCTCATAACATCACTGAAGCCCCTTGTTGTTCCTCAGCTCCTCTTGATCCTGCATTTTAGTGAATCCTCTATTTCCACAGCCCTGTCTGGGAACACATACGGCATTCTGGAAAATGGGGTCTGGTTGACAGCCTTTCCATCCCACCATGCTGTTTTTGTACTGCGTTCCTATTTGCTACCGTTTGTCCCAGGGCGACTGTACGGAGTCGAGCGTGTATGCAGGCTTGGACCTAACTACCGAAGCGAAGGCCCAAATCTAAACAGATTCACGTATTCAAAGTGGCCATACTTGAACGCGGTCTAAAGAAGAGCACTTTCCAACGAGCAATTTCAGATTATGATCTTTCTGGCTCATTGATGTGAGTGTTGAATGTAAATGGCCTGAATTTCCGGAGTCTGTTGCTGCAGCTTAGTGTTCGCCAGTTGTGATCTTTTACATGAATGGCACCTCATTTACGACTACTGAGAAAACTGTACATGTCGCTGATGAATGCTATGTTCACGACATATGGTAGAGATGGAAAAAATTCCCATGTACAACTTGCAAGTGTCATCCAGACGGGTTATAAATCAGAGCTTTCAGAAAAGTCGTCACTACGAGATGCAAGTTGACAGAAGAGCTATTTAAAAGTTGGAAACTCCGATATGACGTGAATGTGGCATAATCAACGACATAATGGTCAAACCCAGGAATGTCGGATTGCTGTACAGTTATTCCTGCTCAGTGCACAGCCAAGCAACCATCATcacttaggtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctctctgCTCGTTTTCTTTTTGCGCTCCTGTTCCCGCTCGCCTGTGTGTTTTTCCCCGGCTACCTGTGAACATACTGGATGTTTATTCTTCAACGTGGACGATTTAACGCTACATCGTTTCTCAGATGGCGTGTTTCTTTGagggtgtgcgtgtgtataatgtgtgtctttgttgttCCTGTCGGTGTCTCCTCCCTCCTGTCTTTGTTCTGGATGTGACTGTATTAATTGCGGCCTGGCGGAGCACCACCTGCAGGTCCAGCTCAGTCTGCACTAATTTCTGCCTGTTGCACTGGGACCCCCCCCCAACAAATGGACCAACATGCACtggattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcagggcaGGCCTGTGATGCTAAAAGACTCCAGATCCGGAGCACTCACCGGCCTCGCCCTCTTGCAGCAAAAatcattgatttgttttttacGGGCTCGAGCTGCGCCATAGGCGGTTTTCTCAGAAGCCATAGCCAGCACTTTGGGATCGGTGTGAGGCTTTTGCGGTGCATGTGGTGATATCCATCTTATTTGTTCAACCTCCTCACTCGCACCACGCTTTACTCAAAGGGCTGCCTCCCcccgtcctcctcctcccccctcttctGTCTGCTCCTCCACAGTGGGATCGGTGAAGACCTTCTAACCCATATCACTGACTTTGCCGCCACTTTTCCTCCTGCAGAAAATCATTGCCCCTGTCTCGCCTGGATCACAGATCACGGATGGTCATACATGCAGGAAACTCGCATAACTCAATCAGCACGCCTGCACTTTGTCTTTCCAGCCACGCTCTCTGCTCTCCCAATGTTGTTTTTCTCTTGTGTCCTCCCTCTTCAGCTTTAAGTtttgcctgctgtgtgtgttaaAGCTCATGGATCGTCGGCAGTAATTTATGTCTGTGTAGGAGTGTATCTGCTCACCAGTAACATAAagccaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccctgccGTTACCTGTGCTTTTACATCTGagagatttttattttcttctttttgaccATAACCCATAAACAGTCGTACAGATATTTAGTATGTATTTCAAGTATATTTGGTCACCAGTCAACCAGGCCCTAccttgcttttcttttcttttttttctttttttttatcttatcttgCAGACATGCCACCAAACATCTCACCGGGTAACCATGGGAACGAACCAAGAGGACCATTTTGCAATCCTcctgacacacgcacacacacacacttcctctctctttctgaggAGTGTGCGTGTTAGTGAAAACTTAAACACACCATATACATTGAAACAGTATCGATGAGTCTAAAGGCCTGTCCGTCATGAGGCCTGTTTCCagatattgttgtttttaaatggctGTTCTTATTATCGCTATTGTTGTTCTATTGGTGAGTTGTTGTATTTTCTTCTCgttggttattttttttttttttttacataaaagggAGTTAAGttgtatcattttttttttataattaggatgtttttatttgtatttttttctcttatggGCGTGTTTATTATTGGCAGTGTTCAATCTTtatgaaacctttttttttttttttttctttttgatttcCCCTCCAGGATCTTATAAGGAATTATTTTAAAAGAAGATATAAGTAGATTGTCAAAGAGATATGAGTTATTGAGGGTTATAGTCTGTATATTCTATGGGTATTATGAATTAAACGATTAACAAAGAAACAACAGAattatatacataaataaaatttCCTGATACTGTTA

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04371 ERK, MAPK1_3; mitogen-activated protein kinase 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207214 lncRNA upstream 13632 8651618 ~ 8652838 (+) True G152991
TU207213 lncRNA upstream 19048 8646923 ~ 8647422 (+) True G152990
TU207204 lncRNA upstream 36825 8628708 ~ 8629645 (+) True G152981
TU207194 lncRNA upstream 154676 8506326 ~ 8511794 (+) True G152973
TU207193 lncRNA upstream 157106 8506326 ~ 8509364 (+) False G152973
TU207235 lncRNA downstream 19151 8703916 ~ 8704191 (+) True G153005
TU207260 lncRNA downstream 111741 8796506 ~ 8802661 (+) True G153022
TU207270 lncRNA downstream 122089 8806854 ~ 8810032 (+) True G153026
TU207309 lncRNA downstream 210874 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 210874 8895639 ~ 8903846 (+) False G153049
XM_039824669.1 mRNA upstream 40119 8601604 ~ 8626351 (+) False atp2a1
XM_039824668.1 mRNA upstream 40119 8601612 ~ 8626351 (+) True atp2a1
XM_039825488.1 mRNA upstream 78267 8557819 ~ 8588203 (+) True LOC120574961
XM_039825820.1 mRNA upstream 110185 8538590 ~ 8556285 (+) False LOC120575169
XM_039825821.1 mRNA upstream 110185 8544433 ~ 8556285 (+) True LOC120575169
XM_039825209.1 mRNA downstream 1072 8685837 ~ 8694204 (+) True gdpd3a
XM_039825210.1 mRNA downstream 12134 8696899 ~ 8700587 (+) False ypel3
XM_039825211.1 mRNA downstream 19855 8704620 ~ 8710204 (+) True LOC120574773
XM_039825213.1 mRNA downstream 28050 8712815 ~ 8719543 (+) True atp6v0ca
XM_039825788.1 mRNA downstream 38249 8723014 ~ 8730362 (+) True spsb3a
TU207168 other upstream 217173 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 217173 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 538489 8127265 ~ 8127981 (+) True G152892
XR_005642011.1 other upstream 593165 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 593389 8073008 ~ 8073081 (+) True LOC120575508
TU207220 other downstream 12203 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 72481 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 274483 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 376551 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 389106 9073871 ~ 9116603 (+) True G153245

Expression Profile