RNA id: TU207214


Basic Information

Item Value
RNA id TU207214
length 1121
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G152991
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8651618 ~ 8652838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTATTGAacaatgtttttaatatatttattaagtcCTTTGTAATTAAAACATGGTCACAATGTAGAacaggaaaacacaaaaaaaaaattttgtcaCTAGTCAAACGGTAAAATGTTTGATTGCTGGACATTTACTTCAATAACAAGAGTTGTGCAGCTAACTGAATATGCTACATATTAGCTAACAAACATTCATGATGTGAAGTGGATTAATACCAAAAGAGTAAATTCAAGACACCAATCGGCCAAAGTCCTGTATAAAATGCTGCCAAAGTCCTGTATAAAATGCTGGTGAAAGTTCTTATGCAAAGCAACTCATGTATACCAATGCTATATGCCATTTAACCAAATTACAATGTCTCAGATAAAGGAATATTATAAATAGTTTGTAAATATCTTAAAAGTGGTAGAAGCCTGAATTCCTTTGAGTGGAAGCAGAGGCacaatatacatgtatataaatGCTCACAACAAATGTGATCAGTAACAAAGGTTTATcagtaacaaaaacaaaaattatcTGCAGGTAGTGTGGTTACGAAGTAAACGGACTTTACAGTATCCAAAGCACCAGATCTTGGATGGGTTTCTACGTGTGTACCATATGCTTATAATTTGACATCAACGACATTAAGTGGTAAGATTGACACGACGGCTGGTGTGAAACCTTGGCAAAGCTTTTATTTCATTCGGTCCAGTGTCGTCGGTGCGGGGATGCTGAATCATTGTGTACATCTGTCTTTTACAAGTCCATGTCCTGATCGCTGACACTCTGGCGAAGGTATTCTTCATACAGCTTTTTCTTTGGTCTTGACCACCTCCTGAACGTACTCCAGCTTCTCCTGCAGTTGCCTTTTCTGTTTGCCTGACAGAGTTGGTTGAGTCCTGCAAAGGATTAAAGGGAATTTGATGACATGTGTTATTAACATACAAGCTGAAAAAATTGAGAAAGTTGATTTTTAATCCTTTATCAAGGGCAGTGCTGCAAATCCAGCGAGAGTCCAAATCGCATGCCACTTCTTAACATAGATTATCTTCTTGATTCCACAAAGGGAGACAAAAAGTGTCACAGCTATAGTGCATGCAATATATAGTGCATGCACAAAACTGTACTAGAG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207213 lncRNA upstream 4196 8646923 ~ 8647422 (+) True G152990
TU207204 lncRNA upstream 21973 8628708 ~ 8629645 (+) True G152981
TU207194 lncRNA upstream 139824 8506326 ~ 8511794 (+) True G152973
TU207193 lncRNA upstream 142254 8506326 ~ 8509364 (+) False G152973
XR_005641949.1 lncRNA upstream 149714 8496347 ~ 8501904 (+) True LOC120575098
TU207224 lncRNA downstream 28593 8681431 ~ 8683841 (+) False mapk3
TU207226 lncRNA downstream 28593 8681431 ~ 8684417 (+) False mapk3
TU207235 lncRNA downstream 51078 8703916 ~ 8704191 (+) True G153005
TU207260 lncRNA downstream 143668 8796506 ~ 8802661 (+) True G153022
TU207270 lncRNA downstream 154016 8806854 ~ 8810032 (+) True G153026
XM_039824669.1 mRNA upstream 25267 8601604 ~ 8626351 (+) False atp2a1
XM_039824668.1 mRNA upstream 25267 8601612 ~ 8626351 (+) True atp2a1
XM_039825488.1 mRNA upstream 63415 8557819 ~ 8588203 (+) True LOC120574961
XM_039825820.1 mRNA upstream 95333 8538590 ~ 8556285 (+) False LOC120575169
XM_039825207.1 mRNA downstream 13632 8666470 ~ 8684765 (+) True mapk3
XM_039825209.1 mRNA downstream 32999 8685837 ~ 8694204 (+) True gdpd3a
XM_039825210.1 mRNA downstream 44061 8696899 ~ 8700587 (+) False ypel3
XM_039825211.1 mRNA downstream 51782 8704620 ~ 8710204 (+) True LOC120574773
XM_039825213.1 mRNA downstream 59977 8712815 ~ 8719543 (+) True atp6v0ca
TU207168 other upstream 202321 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 202321 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 523637 8127265 ~ 8127981 (+) True G152892
XR_005642011.1 other upstream 578313 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 578537 8073008 ~ 8073081 (+) True LOC120575508
XR_005641904.1 other downstream 13632 8666470 ~ 8684765 (+) False mapk3
TU207220 other downstream 44130 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 104408 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 306410 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 408478 9061316 ~ 9067135 (+) True LOC120574330

Expression Profile