RNA id: XM_039824548.1


Basic Information

Item Value
RNA id XM_039824548.1
length 3715
RNA type mRNA
GC content 0.56
exon number 20
gene id cramp1
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8779616 ~ 8795001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTACAATCGAACCGCAGGAACTGTCATCTGTAACAAGCTGGACGGCTGCCGTCAGCTAGGAATGCTAGCCTGTGTTTCGATTGGTAATACCAACAACAGGCTTACACTTCAGCATGACACTGGGCTCCAGGGAGGGGATCGGTGTCGATGGGAGGAGGAATCCGTCCAGAAAGCCCGAGGGTTGCGACGAAGAGGAGAGCGGAGAGCAGGCGAGCGAGGAGCGCAGTACAAAGGGAGACGACGGAGTGGAAATTCTTAATCCATCAACCACGGATCTGAGCCCCGGTTCAGCTCCGGTTCTCCCCGCCTCTCCGCCGAACCAAACCGGGCTTGGCTCAAACCAGCATTCCCAGACCTCAGCGGAGCCCGCCCCTCCGTGTCAAGACCAGCATCATTTTCTCCGATCAAGCGTTCGACCTCCGAGCAAACGCATCCGGAAGGATTCAATCGGCTCGACCATTAATGGGCATGGCGGGGCAAAATCGAAAGGGGTAGAGAATGGCTCGTCCTCTCAGGGGACAGTGGGACAGTCAGGGCCTGTGTCAGGCTCCACGGGGGGAGTGTCGAAGGCCTCCAAGGGCCAAGGGTCTGCTGAGAAGGAGGAGCAATCTGGTAACCAGAAGAGGGCCCGTCGGCAGTGGGAATCTTGGAGCACAGAGGACAAAAACAGCTTTTTTGAGGGGCTCTACGAGCATGGGAAGGATTTTGAGGCTATCCAGAACAACATTGCAATGAAGTATAAGAAAAGAGGCAAGCCAGCCAACATGGTGAAGAACAAGGAGCAGGTTCGCCACTTTTACTACCGGACCTGGCACAAGATCTCTAAACACATTGACTTTGCCAATGTGTACTCCAGAGTGCTGAAGAAATCCTCTCAAGAACTGTACGGCCTTATCTGCTATGCCGAGCTCCGCAAAAAAGTTGGAGGGCTAATGGATGATAAGAATGTGGCAAAGCTGAATGAACTAATCCAGCAAGGAGCCACCACCGTGCGCTCCAAAGGGAGGAACTTGCGGATCAAAGCACCCATGTGCCGAGCACTGAAGAAACTTTGTGATCCAGATGGAGTGAGTGACGAGGAGGACCAGAAGCCGGTGCGTCTACCCCTGAAGGTGGCAGTGGAGCTCCAACCACGCAGTAACCAGTCCTGGGCCCGCGTTCAGAGTCTAGCCCACAACCCTCGCCTCAGGATGGTGGTGGAGCTCCACAGGAAAGTCTCCAGCCTCATTGAGTATCTGAAACAGAAGTGGGCGTACCATGACCAGCGGATTCTTAAGAGTCTTATGGAGAGGGAGGCTCTGGAGGGTGGCCAGTCCAACACAGCGTCTCCCAGCAAATCCCAGCAGGATGAGCTCTTTCTTTTCCCCGCCGAAAGCAGTACTTTGACCACACTTCCTGGTGTGGCACGTGTCGTTCACTCCAAGGCCTCCTGCACTGTACACTGGCTAGAAAGTGGCAAGAACCGGCCTAATGCCAAGGAACTCCCAGCTGCTCAGATTCTGGGTATTCACACAGCTCCACCACTTCGGACTAGCACTAAATCTGGACGGGGAGGcacagctgctgctggaggTGCTGGCTCTTCAGTGACTGTATTGGGTGATAGTAGACGAACTGAGCCCCTTAATCCTGAGCCTTCACAAGACTGTTCTACAAAGGTAGAGGAGAAGAGACCTCAGTCTGTTTCTGTCCCTGCCTCCTCACAACAGACTGTGGCTCCTAGGGAAGAGGGAATTGGGATAGGGCCCTTTGAAGGGGGAACAACCGGTAGTGGTGTGGAGGCCAGTAGTGGTTTAGCAGTGACCAAAAGCATGGACAACTTGTGTAGTGGTACAGAAAGCTCATCTGAGCAGTGCAAAGAGGAGCTGAACACCATCACCTCTTCCCCAGAGGGCAACCAGACTCCCCCAGCCAAACCTTCAGTGACTGGCTCAGAGGAGGGAATGTTGCAGGGATCTGCACCAGCAGCCAAAGAACGAGCTGTTGAGCAGATCAGAGGGGAGGGCTGGAGCGCCCGTGACGCAGAGAACGTCACCCTGGCTGAGCTCTACCTGATGTTTGGGAAGCCTGGCAAACTGCAGCTGGAGTATGAGTGGCAGCCCATTGCAGCTCCTTTCAACAACCAAGAAAACGGACAAGCCTCGTCACAGCTCAAGCCCAACAGGACACACCGCGTTTTGCGCTGCCTGCTCAAGCTGGTTGCCACCGAGGTCAATCCTAAACCTTTGGCTCCAGAGCTGTGCTCCACAGCTACATCACCACTTAAGACCCATCAAGAGGAGCAAAACCAGGCCCTCACACCTCCAGGGAAGGGTCCCATAGCAGGTGTTCGCAGCCCCAGCTTTGGCCGGCAGCAGGGGTCTATCCGAGGGGCCCGGTTACACCTGCCAAATGCTGGAGTCTCAGGTGGACGCAACCTGCCCCGCTCTCTGCTGGGGTCGACGGCGGGCAGCGACGGAGAAAGCGGTGTGTTTGCAGTACCCACCACACTGCCCCCCAACAGCTCACGGCACAACAGAATGTTTTCCCCCAATAAGGAAGCTGAGCTAGCCCTCAAACAGCAGCTCGACTCTATCAGTCAGTCAGATCTTTTTTCAAGACAGAGAAAACCTCGAAACCGACAACTTCGGAAACCACTTGTAGTTCAGCGAACACTCCTACCCCGAACTACAGGAGATACTCCTCAGCATGTCTGCTCCTTCTCTATCCTCTCCAACTCCTCTGCCACAGGAACTGGATCTTTCCGGCCAATCCACACTCGCCTGGCTCCTTCCTCCCGCCCCCTCCTGTCCAAAGCTTCCACTGCAGCGTCTAGCTCTGCAGCGGCCAGCCAGCTCTCAAGTGCCATTGACCTGGCAGCGAAGTCTGCAGGTATCATCCCTGGCAGTCCCTGTCGGGAGCTAAATTCTCCCGCTGTTGATAACCGTACCCTGCTCGCCACCACACCCATTGTTGATGCTGAACCAGACTCTCAACTCCTCCAGCACAATGTCCCAGAGAATGGTCAGCCTCCAGCGTCTCCTGAAGTGATCGGTGGTGGggactctctcctctctccacccAGCGTAGCCTCGCTCCTGGACATCTCTCTCCCTGGCCCCCCCGAAGAGGCTCTAGCCCCCGGAGAACCTCAGACACACATCAGTGACTCCATCATCGAGCTCGCCATCAACTCTGCCCACtatgGCGAGGAGGCCGCTCTCTCTCCAGCCAAGCTGAGCAACAATGACGGCTCCAAACTGTTGGCCTCGTCTCCGTCAGTCAGCCCGTCCAGAGGCTGGATCCCTTCGCCCAGCCATGACCCCCAGTGGTACCCCAGCGACTCatctgactccacactgggatGCCTCCTGTCCAGCATGGTCTCTCCTGATAAGGGCAAGCGGAACACCCTAACCCCCTCTGGTCCCTCCAGCGGCACAGCTTTGCTTGGTCCTAGCCTCCTGGACTGCAACTCCCATGATTCCTTTCAGTCCCGTGGCATTCCTGATGTGGCAGAAATGGACTCTCAGCTTGCGTGTATGATGAGTGAGAGCAGCGTGGACTACATCGCTCGCTTCAATGACCTGGCTCAGGAGCTGGCTGTGACAGAGCCCTCCATCCCACCACCCTGAGGAAGAGGACCTGGCTCCAACGGCCATCTGAAGGATACGACTTTGCTTGGTCTAGACTGTCAGGTCTACTTTGGAGAAAAGACGGCTGTAGAGTAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207235 lncRNA upstream 75425 8703916 ~ 8704191 (+) True G153005
TU207226 lncRNA upstream 95199 8681431 ~ 8684417 (+) False mapk3
TU207224 lncRNA upstream 95775 8681431 ~ 8683841 (+) False mapk3
TU207214 lncRNA upstream 126778 8651618 ~ 8652838 (+) True G152991
TU207213 lncRNA upstream 132194 8646923 ~ 8647422 (+) True G152990
TU207260 lncRNA downstream 1505 8796506 ~ 8802661 (+) True G153022
TU207270 lncRNA downstream 11853 8806854 ~ 8810032 (+) True G153026
TU207309 lncRNA downstream 100638 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 100638 8895639 ~ 8903846 (+) False G153049
TU207322 lncRNA downstream 129586 8924587 ~ 8927470 (+) True G153058
XM_039823667.1 mRNA upstream 40040 8733708 ~ 8739576 (+) True nme3
XM_039823666.1 mRNA upstream 40040 8734375 ~ 8739576 (+) False nme3
XM_039823680.1 mRNA upstream 46602 8730966 ~ 8733014 (+) False mrps34
XM_039823682.1 mRNA upstream 46602 8731118 ~ 8733014 (+) True mrps34
XM_039825790.1 mRNA upstream 49254 8723232 ~ 8730362 (+) False spsb3a
XM_039824556.1 mRNA downstream 22736 8817737 ~ 8834110 (+) True LOC120574270
XM_039824558.1 mRNA downstream 22736 8817737 ~ 8834110 (+) False LOC120574270
XM_039824559.1 mRNA downstream 22736 8817737 ~ 8834110 (+) False LOC120574270
XM_039824560.1 mRNA downstream 22736 8817737 ~ 8834110 (+) False LOC120574270
XM_039824557.1 mRNA downstream 22736 8817737 ~ 8834110 (+) False LOC120574270
TU207249 other upstream 17034 8757246 ~ 8762582 (+) True G153016
TU207220 other upstream 77845 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 94851 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 330319 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 330319 8445446 ~ 8449297 (+) False mcrip1
XR_005641789.1 other downstream 164247 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 266315 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 278870 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 286846 9081847 ~ 9086215 (+) True LOC120574580
unassigned_transcript_721 other downstream 306184 9101185 ~ 9101623 (+) True LOC120574615

Expression Profile