RNA id: XM_039824871.1


Basic Information

Item Value
RNA id XM_039824871.1
length 3694
RNA type mRNA
GC content 0.44
exon number 19
gene id xab2
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16306226 ~ 16314296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATGTGACGAAGCCGGAAGTATCACTACGGGCTACACGCTTTGAGTAGTCTGCAACGTTAGCTGACATTACAGTTAGCATAACTTCTTTTCTTAATATCGGACGGCCATTCTCTTTAGGAAGAAATGCCTTCGCTAAATGGAAAATCTGATGTTCTGTTTGAGGACGATGATCTGCCTTATGAAGAGGAGATTATCAGGAACCCATACTCAGTCAAGTGCTGGATGCGTTACATCGAATTCAAACAGAACGGAGCCAAATCCACCCTCAACATGATATATGAGCGCGCTCTGAAAGAGCTGCCTGGCAGCTACAAGCTGTGGTACAAttatctgagagagagacggaAACAAGTCAAAGGGAAATGTATCACTGAACCAGGCTATGAAGAGATCAATAATTGCCATGAAAGGGCATTGGTGTTCATGCATAAGATGCCTAGAATATGGCTTGATTACTGCCAGTTCCTTGTGTCTCAATGCAAGATCACAAGAAGTCGGCAAACATTTGACCGTGCTCTCAGAGCTCTTCCTGTTACTCAACACCCACGCATCTGGCCTCTGTATCTCCGCTTTGTGCGTAACCTGCCCCTGCCTGAGACTGCCATCCGGGTGTACCGCAGGTATCTTAAGctttctccagaaaatacaGAGGAATACATAGACTACTTACGGTCTGTTGGCCGCTTGGATGAAGCAGCTGTGCGACTAGCAGCTGTTGTCAATGACGAAAGCTTTGTGTCCAAAGAGGGCAAGTCTAACTATCAACTGTGGCATGAGCTATGCGACCTGATCTCCCAGAACCCTGATAAAGTGACCTCTCTAAATGTAGGAGCCATCATCCGAGGAGGCCTCACTAGATTCACAGACCAACTTGGAAAACTCTGGTGCTCTTTAGCTGATTATTATATCAGGAGTGGTCACTTTGAGAAGGCCCGTGATGTGTATGAGGAGGCCATCCTTACGGTGGTAACAGTAAGGGATTTCACACAAGTGTTTGATAGTTACGCCCAGTTTGAAGAGAGCATGATTGCAGCAAAGATGGAGACCACTGCTGAGATGGGAAAGGATGAAGATGAGGACATAGACATGGAGCTTAGACTGGCCCGTTTCGAGCAGCTGATAGCCCGGCGGCCCCTTCTTTTGAACAGTGTTCTCCTGCGGCAGAACCCTCATAATGTCCATGAGTGGCACAAGCGGGTAAAACTGTATGAGGGCAATCCACGGCAGATCATCAACACATACACTGAGGCAGTGCAGACTGTGGATCCGATGAAGGCCACAGGGAAGCCTCACTCTCTCTGGGTTTcctttgctaaattctatgaggAAAATGAGCAGCTGGATGATGCCAGGACAATTTTTGAGAAGGCTACCAAGGTCAACTACAAGCAGGTAGATGACCTTTCTGCGGTGTGGTGTGAATATGGAGAGATGGAGCTACGCCATGAGAACTATGAACAGGCACTGCGTATACTGAGGAAAGCTACAGCCATCCCATCCAAGAAAGCGGAGTACTTTGATGCATCCGAGCCAGTCCAGAACAGGGTTTACAAGTCCTTGAAGGTCTGGTCCATGCTGGCGGACTTGGAAGAGAGTCTCGGCACTTTCAAGTCTACAAAAGCAGTGTATGATCGCATCATTGACCTCCGCATCGCCACGCCACAGATCATCATCAATTATGCCATGTTCCTTGAAGAGCACAACTACTTTGAGGAAAGCTTCAAAGCATATGAGCGTGGTATTGCTCTCTTCAGGTGGCCAAATGTTTATGACATCTGGAACACTTACCTCACCAAGTTCATTGATCGTTATGGGGGCAAGAAGCTGGAGAGAGCTAGAGATTTATTTGAGCAAGCCCTAGATGGCTGCCCTGCCAAGTTTGCCAAAACCATTTACCTGTTGTATGCCAAATTGGAGGAGGGATATGGATTGGCACGACATGCCATGGCTGTCTATGAAAGGGCAACGCAGGCAGTAGAAGCTGAGGAGAGACATCAAATGTTCAATATCTACATCAAGAGAGCAGCTGAAATTTACGGAGTCACGTATACCAGAGCAATTTACCAGAAAGCTATCGAGGTCCTTCCTGATGAGCATGCACGGGACATGTGTCTGCGATTTGCTGATATGGAGAGTAAACTTGGTGAGATTGATCGGGCCAGAGCAATTTACTCCTACTGCTCCCAAATCTGTGACCCAAGGGTGACTGCAAACTTCTGGCAGACATGGAAAGAATTTGAGATCCGCCATGGAAATGAGGACACGATCAGAGAAATGCTGAGGATCAAACGTAGTGTCCAAGCCACATACAACACCCAGGTCAACTTTATGTCTGCTCAGATGATGAAGGCTACAACAAGCTCCACAGTGTCAGATCTTGCTCCAGGCCAAATGGAAATTGATGACATGAAGATGCTGGAGCAGAAAGCACAACAGCTTGCTGCAGAGGCCGAGCAGGACAAACCCAAACTCAAAGAAAAGATTCTCTTTGTCAGGAGTGACACCTCTCGCAGTGAGTTGGCTGAGCTTTCCAAACAAGCCAACCCTGATGAGATTGACattgatgatgaggatgaggatgaagatgatgaaAACCAGGGACCAGAAGAGGTGCAGCTTGAACAGAAGAGTGTCCCCACAGCTGTCTTTGGAGGGCTTAAAGAGGACTGAAAGCTACCTCCCCTGCTGAAATTTGCAAAGATGCAGTCTTCGGATTTCTCTTGTATACATTGAATATGctccatttttttaaatctaaatacaCCTTGTGTAATTCCTTAGTTGTATCCACTTTATTTTAATAGAATGTGActaaagtgagaaaaagaatgGCAACATTTGTTGCCTGGTGTATTTTTGTAGTACAGTAAACAGAGACATGAACTTGTATTAAAACTGTCCATATGGTGTCAGTCTTTCTCAAGTATGTAGCTCACTGTAATTGTACAATTGAGCAGTATTCTGTTATGAAATACTAATACGTCTGATGTAGTTTGACTTTGTGTCCGAACCAAATTTTGTAAAGGAATGAACAGTGAAAACACGTTTGTACACTGATAATGCAGAGATCTTTCTCTGACAGGGAGCTCTGGCCTAGAAAATGGGAAAAgcatagtgttttttttttttcaacaggaGGCATTCATTTGAAAGTTGACCTAAGCACTCAAGCCTCACATTGTTGGTTGGAGGATTGGTGAGTGTCTTTCGAAACCCAATGACCCTGAAAAGATTTCAAAACTTGTACTATACATAGGTCACCGTCCAAATATTGAAATCATGCTCTGGTTGTACATGTATTGTACAAGTACACTCAAGGGACAGTTTATACGACTGAGTTAGATAATAGGGGTGctgtaaaacattttgtaaatttATAATCAAATAGCCCTGCAGCAAGTTCCTAATGCCCATTTTTTGTGATATAGGTGTAGGTGTTCACTTGGTTCACTGATCATTTTTGAGGCTGTAGGTAGTAATGCTGTAATATGTATTTTAGTCAGTGTTGTTGAGGGTCTACTTTTGACTCGATGCAGTCTGGCCGTTTTTGGTATGAAAGTGTTTTTGAAAGTTCTGTTTGTGAATTGTGCACCACCAATTCTAACAAGCTGGTCTCTTCGAATGTCTGAAACTTTCTTCACATTTTCTTGAAAATGcagttttaattaaaaaaatatttacacctGTTAAAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K12867 SYF1, XAB2; pre-mRNA-splicing factor SYF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210639 lncRNA upstream 44222 16259782 ~ 16262004 (+) False LOC120574544
TU210628 lncRNA upstream 65144 16216514 ~ 16241082 (+) True G155393
TU210615 lncRNA upstream 105114 16158651 ~ 16201112 (+) True G155384
TU210537 lncRNA upstream 405704 15893874 ~ 15900522 (+) True G155342
TU210549 lncRNA upstream 414192 15891095 ~ 15892034 (+) True G155346
TU210659 lncRNA downstream 470 16314766 ~ 16314974 (+) True G155413
TU210654 lncRNA downstream 1558 16315854 ~ 16387522 (+) False camsap3
TU210827 lncRNA downstream 166260 16480556 ~ 16480805 (+) False col5a3a
TU210835 lncRNA downstream 248364 16562660 ~ 16563997 (+) False olfm2a
TU210903 lncRNA downstream 338637 16652933 ~ 16653513 (+) True G155602
XM_039824875.1 mRNA upstream 23686 16276452 ~ 16282540 (+) False LOC120574510
XM_039824873.1 mRNA upstream 23686 16276452 ~ 16282540 (+) True LOC120574510
XM_039824874.1 mRNA upstream 23686 16276452 ~ 16282540 (+) False LOC120574510
XM_039824882.1 mRNA upstream 31168 16262716 ~ 16275058 (+) True stxbp2
XM_039824883.1 mRNA upstream 31168 16262716 ~ 16275058 (+) False stxbp2
XM_039824847.1 mRNA downstream 1536 16315832 ~ 16340889 (+) True camsap3
XM_039824849.1 mRNA downstream 1536 16315832 ~ 16340889 (+) False camsap3
XM_039824848.1 mRNA downstream 1536 16315832 ~ 16340889 (+) False camsap3
XM_039824913.1 mRNA downstream 48963 16363259 ~ 16366875 (+) False LOC120574536
XM_039824912.1 mRNA downstream 48964 16363260 ~ 16366875 (+) True LOC120574536
TU210542 other upstream 415208 15887190 ~ 15891018 (+) True LOC120574525
TU210337 other upstream 777808 15527941 ~ 15528418 (+) False rasd2
TU210329 other upstream 793416 15510225 ~ 15512810 (+) True arl16
TU210192 other upstream 1166520 15135791 ~ 15139706 (+) True G155088
unassigned_transcript_851 other upstream 1313718 14992013 ~ 14992508 (+) True LOC120575440
XR_005641831.1 other downstream 443349 16757645 ~ 16766745 (+) False raver1
XR_005641811.1 other downstream 1402443 17716739 ~ 17724229 (+) False rmi2
TU211348 other downstream 1422683 17736979 ~ 17741048 (+) False pla2g10
XR_005641818.1 other downstream 1966494 18280790 ~ 18304091 (+) False ttyh3a
unassigned_transcript_856 other downstream 2011033 18325329 ~ 18325400 (+) True trnac-gca_23

Expression Profile