RNA id: XM_039825811.1


Basic Information

Item Value
RNA id XM_039825811.1
length 2411
RNA type mRNA
GC content 0.45
exon number 6
gene id rpusd1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6758260 ~ 6766315 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagaagaagacgacgaAGAGGCAAGAGGCTCCGCAGCGCAGCCCTCTGCCCAATCAGCggttttgtttacatttgtgtttCCTGTACGCTTATATTCGGTATGTTCTACTGTCTATGGgtatgttgacaaaaaaaataataccacATATTAGTCTTGGCTGGTTGTTCGAGGGCTGAGCGAGTTGTGTCAGTTAAACGCTGCACATGATGACCTCAGAGTCTGCCAGCCTGGAGAGCCTGCGCGTGCTGTTTCAGAGCGATGACTACATCGTGGTGGACAAGCACTGGGACATCCGCATCGACAGCAAGATGTGGTACGAGAAGCACACCGTGCAGGCGCAACTTCGGCACCACTTCCCACAGCTGGCAGACCCTAGCACCTACTATGGATTCAGGTTCTGTCATCAGTTGGATTTCTCCACGAGTGGGGCTCTTTGTGTCGCCCTCAATAAGGCTGCTGCCGGCCGGGCTTACCGCTGCTTCAAGGACCGCACCGTCACCAAAGCCTACCTCGCCGTGGTACGTGGCTTGGtagaaaaagagacacaaactttGGACTTCTCCATTGGCAAGAACTCCTCAGAGGGAAAAACACACATGATGTGTATTGAGGGAacagaagGTTGTGAGAACCCCAAGCCTTGCCAAACTGAGCTGATGGTTTTGGAGTATGGGTTGTATGATGGAGACCCTGTCACCAAGGTGCTACTGCAGCCACTCACTGGCCGAACCCACCAGTTAAGGGTGCACTGCAGCGCAATAGGCCACCCTATCGTTGGGGACTTTACTTACAGCTTGGGAGCGGACGACTCAACCTACCGCATGATGCTGCACGCCCACCTCCTCCACATTCCCCTGGAACCTGAGCCCCTGCTCGTCTCTGCTGGAGACCCCTTTCTCCCCGCGGTGGATCCCAAGTGGCTCCCACAGCGCTCATTACGGACACTGACGGCCACTGTGGAGGCGCTGCTGGAGCACAGGGTGGAGGAAAACAGGAAGataaaagaggagaagagagagagggcgagaagggaggaggagaagaggaaaggaCGCAGGGAACAGAGGATTGAGCAGGAGAGTGAGGAGCAGAGGATGCAGTGTCAGCAGTGGCTGAGTGAATGGGCTGGAGACtgatgtattattttaatttatttaagttGTTTACTAAGCAAGGCCACGTTGAGCATGCATGCTCCATCTCACTGACCACTCACGTTTGCTTTGAAATGGCATACATGGAAGTGAGCCAGTACCTTAATTCCCTCACAGTTACAAACATTATGctagaaaaaaaacagtgtgagcatgtgtgctGCTGCTTTCTCAAATAATTCAACCAGAGGCACTGAGCAGTTCCACCGCAGTAGCTGAGAAATAAGTGCTTTGCTCAAGTTTATGTTGACATGTGAGGGGTTGGGTTGATGCCTTAAATTTATTGTAAATACACATCCCCCCCTGCCCTCTTAAGAATTTAAATTGGTGACTTTGTCACACGTCTGTGCTGTCTATGGTCAGATGaacatacaatatgtaattttctgccactaggggaTATCAatcaaaaaataacaaaagacgGCGCAACGTTGTCATTGCAGTCAGTTTCTCCCGGTTAGGAATTCTtcttttcaaaacaaatggaCCCGGTGATTTAAACCGGTAAAACACTGCATAAAGCAGTTTCAaattaaaaatcaatcaatcaaatctcTGATGCAGTTTGGCTCGTCAGCGGAGAACTGCCACAGTTTGCTCAGCTTGTTTCTGTGATAACTTAAGATCCAGGGTTAGCTATAGGTATAGTCCGATGACTAAAATTCTTCATCCAGTTAAAATATATAGTTAAAAAACGACCAAGATCTAGTGGCTTAAAACTGGATAAAAAGTAAATTTATTACCGCTTTTGGCAGACAACCACAATGCTGATGCATGCCCAAAGGGGATATGACGCTATTGACAGGCGACTGCGTCCAAATGACACGCACCGTGTACTTGATTGAAACTACAGATCTCTGGGTTTGAatattgttggaaacattttgggtaatgtaagtacacaacttgacaaatatacaacataggtctagtcatttttagacattttaatgcggTCATTCTAGCTATTATATTTTTAACTCTGATTGCGGACCCTCTGCAGCAGCAAATGTTTTTTGTCCATGTCCAAATGCTGTAAGTTCATGTGTGTTACATACATGCGCTGCAACCTGTAACATACATGGAATCTACCCTGGATGTTTCTGTgccttttgttgtttgttgattGCGTTACAGTGTTAATTCAAactgtttacctttttaaaatgtcaatgtaaCAACAAATGTCTACAATGTACTATTACTTTGTTCAGTACTAATATAAAAGCTAAATAAATGGTTGAATAATAA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206694 lncRNA downstream 1175 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 47061 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 159384 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 160417 6597354 ~ 6597843 (-) True G152559
TU206660 lncRNA downstream 330024 6427328 ~ 6428236 (-) True G152548
TU206823 lncRNA upstream 6574 6772880 ~ 6773713 (-) False arhgdig
TU206870 lncRNA upstream 246941 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 255163 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 434381 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 438008 7204314 ~ 7206094 (-) True G152729
XM_039826238.1 mRNA downstream 1980 6750266 ~ 6756280 (-) True slc25a17
XM_039825287.1 mRNA downstream 9851 6738111 ~ 6748409 (-) True znf598
XM_039825833.1 mRNA downstream 39363 6711624 ~ 6718897 (-) True drg2
XM_039825832.1 mRNA downstream 39367 6711624 ~ 6718893 (-) False drg2
XM_039824028.1 mRNA downstream 59873 6650829 ~ 6698387 (-) True myo15aa
XM_039823650.1 mRNA upstream 6574 6772880 ~ 6801536 (-) True arhgdig
XM_039825497.1 mRNA upstream 48370 6814676 ~ 6831673 (-) False clcn7
XM_039825496.1 mRNA upstream 48370 6814676 ~ 6831673 (-) True clcn7
XM_039823947.1 mRNA upstream 67055 6833361 ~ 6836823 (-) True LOC120573992
XM_039823948.1 mRNA upstream 67181 6833487 ~ 6836823 (-) False LOC120573992
TU206683 other downstream 37617 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 530146 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1144592 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1315832 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1674873 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1965091 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 2046036 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 2087454 8853760 ~ 8856957 (-) True tufm

Expression Profile