RNA id: XM_039778053.1


Basic Information

Item Value
RNA id XM_039778053.1
length 2801
RNA type mRNA
GC content 0.52
exon number 9
gene id wscd1b
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31243993 ~ 31265687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACGGCGATCGTAACGGCATAAGTGGTCGCTCGAAACAAGGATGCCGAGCGTACGCCGCTCCACCGCTGAAGcCTCAGCTTTTCCCTGAGGATCATCCTGGAGTCAGTGACCACAGCCTTGGATATTAAACCCCTCTCTGTTGACACATCCATTGATCCACTGCTGCTATTGGACGATGAAGGACCAAGACACAATGTCTACAGCATGACCTGACGCTGCAGGTCTTTCCAAGATTATGAAGAAATGAGTCACATCTTCTCACTCCTAATCCATGAAATGGCCTTCCACTGAGGTGAGAGACAGTAACCAGGATGGTGGCGCCCCACTACAGGCTGCACTGCTTCTTGAAGCGGGCTCAGATGCTGTTGCTCTGCCTGGGTATTGCCTATCTGATGGCAGGCAGCATCCTTCTGCTGCAGCGCTCCAGCATCAGAATAGCCCAGCCAAACCTGGCCAGCCTGCCGCCTCTGCTGTCCCTCGCAGCGCCTCCTACCGCCCTCAGGGCGTCAGGCCTGGGCGTGAGGGCGCGCTCCAGATGGGCCGCCATTCAGCCTGTGTCTGCAGCGGGAGCCAAGGCAGGGCGACACTGGCCCGCTTCCCAAAGCCTGGGGGTCCAACACGTGCATCGCCGCTGGTTTCACAGTCTGCTGCCAGAGAGCCCAGAGCAGAGAGTATCTCTCCACAGGAACAGCAGACATAAAGGAACCTACATGGGTTGCTTTCTGCACAACGCCAGCGAGCGAGCCCTGGGAGGAACCATGCTTTATGACCTGCGCAAAATGACCAGTTCTCTGTGTCAAGACACCTGCTCAGAAAGtGGGTACCAGTTTGCAGGTCTGGAGTATGGAGCTGAATGCCACTGCGGGAACCGGATCAGTAGCCCACAGGCTCCTGAAGAGGATTGTAGTCTGGTGTGTCGGGGAGAGAGGGGGACTCCCTGTGGAGGTGTAGGCCGACTCTCCATTTACAAGGTGGAGGAGCAGCTGCCAGGTCACAGAAAGTTCAGAAATGTTCACTACCGCGGTTGCTTCAAGTTGCCGAAAAGCACCATCAGCACCTTCCCCGTCCATTCCTTTCAGCCCAACCTAACCACGCAGTCCTGCATCGAGACCTGCACAGACAAGGAGCTGCTGCTGGCTGTGTTCAAGAAGCCCCACTGTTTCTGTGCGTGGACGTCCTCTCTTTTCAGTCTCAGCCAGCAGTCTGACAGCCAGCAGTGCGTGGGGCTGAATCACACCATCAACGCCACGCCCACAGCACCCACTGAGCATGACCACTACCAGGTGTATCACACACCTGTGCTTGACTCCAGGTGCAAAGAGAGGATGTTTCTGCCTCAGAGATCCAGCTCCCTGGTGGCTCTTTCTAGTTTTCCTGGTGCAGGCAACACCTGGGTACGACACCTGATCGAGCTCGTGACTGGCTACTACACTGGCAGCTTCTATTTCGACGGCACACTGTACAACAGAGGTTTCAAAGGAGAGAAGGACTACTGGAAGAGTGGCCGCAGCATCTGCGTCAAGACCCACGAGAGCGGTCAGAAAGAGATTGAGATGTTCGATTCGGCCATCCTGCTGATTCGAAACCCTTACCGCTCCCTCGTGGCTGAATTCAACCGCAAGTGTGCCGGCCATTTAGGACACGCCACAGATGCACAGTGGAAAAGCAAAGAATGGCCAGAATTTGTCTCCAGTTACGCCCCCTGGTGGGCGTCCCACGCTCTGAGCTGGGTAAAGTTTGGACGCCGCCTGCTGGTGGTGCATTACGAGGAGCTGCAGAGAGCTCTTCTCCCTCAGCTCCAGCTCATCACAGCCTTTCTAAACGTCAGTATGACTGAGGAGAGGCTGCTCTGTGCCCAGAGCAACCAGGACGGCCATTTCAAGCGCTCGGGGGCGCAGCAGCCCTCTTTTGATCCATTCACTCCTGACATGAGACAGATGATTGACCCCTTCATTCACACTGTTGACGAGGCACTGCAGAGCAGGAACCTTAGCGGACTTCCACATGAATACCTTCCCAGATGATGATCTGAAAAGGTCATACATtagcccttttttttaaatgttccagCAGGGGTTTGTGAGAGAGAAGTTCTTCCCCTGAGTGCTCTGCAgggaacagacacacactggcTGATGTAAGTGGGCCACCAGACTCTTTGATAAGCCAGACGCGCCGTGAATGGCCGTAGACTCATGAAAGCAGACTGGAGGTCACTGGAGGAAACATGATAATTCATTGTGAAATCCGATGGTGAAGAGTGAGTAAAAGCCTCGGGGCCGGGACTGCCTCTCGGAAGAGccgcaaatatgacaaatactCAGAGAGGATTTGACATGATTTGTTGGCCTGCAGAGTTGGGATTATCTAGCAAAGTGCCCGACTGCACAAATATGAGTGGATAAGTCCAGGATGGACTCATTTTAGTAGAAGAGGGTTTTCTGTGGCTCGTTATAATTTCACTTTAGTACGTATACTGTGTTTAAGCATACACCCACGTTAATACAAATTCATACTAACACAGATGACAGCCACAGCTTTAGCATTACTTAGATTATACAGAATTTCTGTGGTAATTCACTGGTTGCTACAGGTTTGCGATCATGGTGGATAGAAGCCTCAAAGCTGCTACGTGTGGCTGTAAGGACTTTCCATGCAACAAGTTGGACCATACATGGACTCACAAATATGTTGATCACAATGCAACTGCTTAAAACTGTAAACTGAAATCCATCTGGATCTATGAGTATTTTACTTCATTACATGCATTCAGTTTTATTAAAGTTGTTTACCCTCGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230747 lncRNA downstream 99405 31143942 ~ 31144588 (-) True G170154
TU230740 lncRNA downstream 103119 31140478 ~ 31140874 (-) True G170147
TU230731 lncRNA downstream 108608 31134891 ~ 31135385 (-) True G170138
TU230717 lncRNA downstream 133785 31108042 ~ 31110208 (-) True G170129
TU230687 lncRNA downstream 221753 31021904 ~ 31022240 (-) True G170106
TU230808 lncRNA upstream 25034 31290711 ~ 31291013 (-) True G170202
TU230811 lncRNA upstream 80897 31346574 ~ 31347401 (-) True G170205
TU230817 lncRNA upstream 116532 31382209 ~ 31382491 (-) True G170209
XR_005636478.1 lncRNA upstream 300691 31566368 ~ 31589887 (-) False LOC120544288
XR_005636479.1 lncRNA upstream 300691 31566368 ~ 31580535 (-) False LOC120544288
XM_039777993.1 mRNA downstream 255416 30966631 ~ 30988577 (-) False samsn1b
XM_039777996.1 mRNA downstream 259055 30966631 ~ 30984938 (-) False samsn1b
XM_039777995.1 mRNA downstream 259055 30966631 ~ 30984938 (-) False samsn1b
XM_039777992.1 mRNA downstream 259055 30966631 ~ 30984938 (-) False samsn1b
XM_039777994.1 mRNA downstream 259055 30966631 ~ 30984938 (-) False samsn1b
XM_039778405.1 mRNA upstream 70324 31336001 ~ 31337657 (-) True bhlha9
XM_039778403.1 mRNA upstream 92152 31357829 ~ 31370989 (-) True riox2
XM_039778404.1 mRNA upstream 92279 31357956 ~ 31371006 (-) False riox2
XM_039778402.1 mRNA upstream 92279 31357956 ~ 31370991 (-) False riox2
XM_039777859.1 mRNA upstream 164763 31430440 ~ 31476433 (-) False hlcs
TU230664 other downstream 285495 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 392980 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 414050 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 504726 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 829300 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 936032 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 1177609 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 3013625 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 3015248 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 3043317 34308994 ~ 34309714 (-) True G170802

Expression Profile