RNA id: TU230747


Basic Information

Item Value
RNA id TU230747
length 647
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G170154
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31143942 ~ 31144588 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatacagtattgccacggaaaatatcacgATACTATGTTGTATCGATTTCTTTTCCCCCACCGCtactgacaagccagacccacatcaagctATCCTATTCAATCCGAATAGGATAGctctacaaccaaccagagcaacgaagaaggtagcggagctagttgatagattacacTTTTGCCGTATCCCGTCGGTAAAACTCtgacatcttccttttttaagaatgatttctgttccgttctttgttcttttctcaaagaaaagctgaactccaagtcttcctgaagaccgctgttcccagcagcagcagccataagccccgcccaccgactctatacacgatgtgattggcctgaccagagtttggtttttccagctcgcaagccaacggagagtttctagacgaccctggctgcaaattacatttgctgccgctagggtgcgtctagatttctaggctacagaTAATGCTAACCTGtaaaccagtccttccagaaaaacgcatgattcaatgcataatcagccaaagtccgcatatttatgcggggggccgcattttttcaaatacgccgcactttcgccgcataaattgccgatttccgcgcaaaatatgcggggcttgcatgatttcataatccccgcattttcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230740 lncRNA downstream 3068 31140478 ~ 31140874 (-) True G170147
TU230731 lncRNA downstream 8557 31134891 ~ 31135385 (-) True G170138
TU230717 lncRNA downstream 33734 31108042 ~ 31110208 (-) True G170129
TU230687 lncRNA downstream 121702 31021904 ~ 31022240 (-) True G170106
TU230657 lncRNA downstream 206669 30936906 ~ 30937273 (-) True G170092
TU230808 lncRNA upstream 146123 31290711 ~ 31291013 (-) True G170202
TU230811 lncRNA upstream 201986 31346574 ~ 31347401 (-) True G170205
TU230817 lncRNA upstream 237621 31382209 ~ 31382491 (-) True G170209
XR_005636478.1 lncRNA upstream 421780 31566368 ~ 31589887 (-) False LOC120544288
XR_005636479.1 lncRNA upstream 421780 31566368 ~ 31580535 (-) False LOC120544288
XM_039777993.1 mRNA downstream 155365 30966631 ~ 30988577 (-) False samsn1b
XM_039777996.1 mRNA downstream 159004 30966631 ~ 30984938 (-) False samsn1b
XM_039777995.1 mRNA downstream 159004 30966631 ~ 30984938 (-) False samsn1b
XM_039777992.1 mRNA downstream 159004 30966631 ~ 30984938 (-) False samsn1b
XM_039777994.1 mRNA downstream 159004 30966631 ~ 30984938 (-) False samsn1b
XM_039778054.1 mRNA upstream 99405 31243993 ~ 31265687 (-) False wscd1b
XM_039778052.1 mRNA upstream 99405 31243993 ~ 31265687 (-) True wscd1b
XM_039778053.1 mRNA upstream 99405 31243993 ~ 31265677 (-) False wscd1b
XM_039778405.1 mRNA upstream 191413 31336001 ~ 31337657 (-) True bhlha9
XM_039778403.1 mRNA upstream 213241 31357829 ~ 31370989 (-) True riox2
TU230664 other downstream 185444 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 292929 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 313999 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 404675 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 729249 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 1057121 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 1298698 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 3134714 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 3136337 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 3164406 34308994 ~ 34309714 (-) True G170802

Expression Profile