RNA id: XM_039778450.1


Basic Information

Item Value
RNA id XM_039778450.1
length 1564
RNA type mRNA
GC content 0.45
exon number 8
gene id tiprl
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31531657 ~ 31542171 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCATCCAAGGTAAACAGATTTTTCTTTCTGTTAATGTTCGTTATAACACCCAGTTGTAGTGACTGCGAGTTTTCTGGTCATGGACGGCCGTCTTTAAGGTTCAACCGCCACGACAGAGTGCTCTCTGAAGCAGTTGATGTTGGCCTCTCTGTCCACGATGATGTCCCATGGCTTTAAGAGCAGTAAGCAGGACTACACCTTTGGACCATGGACAGTTACTGCTGCCAGAAACCACATCATGAAATCCAAAGACATTGAACGGTTAGCGGAGGAGATGAACATGCCCTCCCTTCCAGAGATGATGTTTGGTGACAACATCCTGCGCATCCAACACACAGAAGGCTACGGCATCGAATTCAACGCCATCGACGCCCTTAAGAGAGTCAACAACATGGAGGACGCTGTCAAGGTGGCCTGTGCTCAGGAATGGCAGGAGAGCAGAGCTGACTCTGAACATTCCAAGGAGGTGGTGAGACCTTACGACTGGACATACACTACAGACTACAAAGGCACTCTTATAGGAGAAAGTATGCAGCTGCAGGTGGTGAAGACGGCGGAGCGTATCGACATGGAGAAGCTCAAGGCTCGGGAACAGATCATGTTCTTCGACGAGGTGCTGCTGTTCGAGGACGAGCTGCACGACCACGGCGTCTCGATGATCAGCGCCAAAATTAGGGTGATGCCCACCAGTTTCTTCTTGTTGCTGCGTTTCTTCCTACGAGTGGACGGAGTGCTGATCAGAATAAATGACACACGACTGTATCACGAGGCTGGGAAGAACTTCATGCTACGAGAGTTCAGCACGAGAGAAAGCCAGATAGCAGAACTGAAGAATGTTCCTGCTGCACTGTACACAGAACCCAATGACATCGCCCAGCACCTAACGCTGAAGCTGACAGAGTGTGAGAGGCTGGAGCTCCCTGGGATGCAGCCTGGGAGCGCTGTCAATGACGTCCTTCCGTGACCAGTATACTAAGAGGTCCACAGTGATGTGTTGCATGATGAAAAAAACGGGAATAGTAGTCCAGAAGCACATCCTTAATCTTACAGTATCATAACAACCATTGATCTTCCCTGAAGTATCTGTACAGGAATAGTTTTTATATGTGACCACTATGATGGTGTGTTCTTAAAACTCAAACGCAACCTGACTTTAGACAGTTTGTAATATCATAGAAACTTTAACCCCCCCCGGTTAAATACTTCGGTCAAGCTTCTGGCTCTGTTCATATTTGAACTGATTTTGTTTTatgagacattttttttcactctcAAAATTGATCGCCCTTTTGACATAAAAGACTTATTAGTAGGTAGGGTAGCTGCTTCCACGCTTGTAATATTAGTATGTCGCTAatgtgtttgtaaaaaaaaacaaaaaaaaaacgcaaccGCTACACAAAACGGCACTGTATTTTCTGAAGTCATCAAGAATTTCTGTAAATATGTCTACTGTATTTTCTACGGTGACTTACGGACGGTGAAAAagcttgtttttccatttgtgAATATATCTTCGATATGGCCAAATAAATTCTGTTTGTGCAAATGTAGCTAACTGC

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230817 lncRNA downstream 149166 31382209 ~ 31382491 (-) True G170209
TU230811 lncRNA downstream 184256 31346574 ~ 31347401 (-) True G170205
TU230808 lncRNA downstream 240644 31290711 ~ 31291013 (-) True G170202
TU230747 lncRNA downstream 387069 31143942 ~ 31144588 (-) True G170154
TU230740 lncRNA downstream 390783 31140478 ~ 31140874 (-) True G170147
XR_005636478.1 lncRNA upstream 24346 31566368 ~ 31589887 (-) False LOC120544288
XR_005636479.1 lncRNA upstream 24346 31566368 ~ 31580535 (-) False LOC120544288
XR_005636477.1 lncRNA upstream 24346 31566368 ~ 31576265 (-) True LOC120544288
TU230927 lncRNA upstream 37818 31579840 ~ 31590013 (-) False LOC120544288
TU230966 lncRNA upstream 202829 31744851 ~ 31745684 (-) True G170332
XM_039777840.1 mRNA downstream 3099 31509560 ~ 31528558 (-) False ska2
XM_039777839.1 mRNA downstream 3099 31509560 ~ 31528558 (-) True ska2
XM_039777860.1 mRNA downstream 55223 31431772 ~ 31476434 (-) False hlcs
XM_039777859.1 mRNA downstream 55224 31430440 ~ 31476433 (-) False hlcs
XM_039776959.1 mRNA upstream 69753 31611775 ~ 31616648 (-) True LOC120543743
XM_039776963.1 mRNA upstream 77685 31619707 ~ 31633080 (-) False hnrnpl
XM_039776962.1 mRNA upstream 77685 31619707 ~ 31633080 (-) True hnrnpl
XM_039778456.1 mRNA upstream 92914 31634936 ~ 31669195 (-) True slc8a2a
XM_039778454.1 mRNA upstream 93108 31635130 ~ 31669194 (-) False slc8a2a
TU230664 other downstream 573159 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 680644 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 701714 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 792390 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 1116964 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU231114 other upstream 659687 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 901264 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 2737280 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 2738903 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 2766972 34308994 ~ 34309714 (-) True G170802

Expression Profile