RNA id: XM_039778561.1


Basic Information

Item Value
RNA id XM_039778561.1
length 3743
RNA type mRNA
GC content 0.47
exon number 27
gene id rb1
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23697334 ~ 23717878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGGGTTAGGTCGTTTGCGGTGTGTCACGTGATCCTAGTGAAAGGGAGCTTAAGATAAATATGAAGCGATAAACCGGGTATCTAATGTAAGTGTCGACATTGCTGGGTTTAAACAGAGACAAACGATCATATAAACTCAGTGAGCCGGTTAGTATACACGGGGTTGTGAACACTGACTGTGAAGAGCGTCTAAAACTTGAAACACCCGCGGCACCGGCACTCCGCCGCGCACTCCGGTGGTACAAAACGAACACCCACTTCACCACGGTTCCAGGAAGTCAGTCAGGTTTTGTTGTATTGTTGCCACGGAACTCTTGCAGTGGGTTTTAAACTTACTACGCCTTATTTGTTACCTTCGAaacatatttctgtttttaataaTACACATATTTGCCTGTTCGGTAACCGGATACCAAGATGCCACCTAAAAAGCGCAACTCTGGGACGACACAGAGCAAAGAGCTGAAGAGTGCTGAAAGTGCCTCTCCAGACAAGAAGGAGAGTCCAAAATTAACGTTATCTGCTAAAAAACACCGAGACAAGGATGCTGAGTTTGTGACCTTGTGTAAGAGCCTTCATGTGACAGACCTGGTGTGTGACCGTGCCTGGACGCTGTGGAAAACTGTTCAAGATTCCATGAATGAAATagctgaCAGTGAAAAAAGGGTGTGGGGGGCTTGTCTGTTTGTCTCGGGGGCAGACATGGATGTCGCCTGTTTCACCTTAACTCAGGTTCTGAAAGCAGTCAGTCTAAATGTAACGCAGTTTGTGGATCTGGTGAGGAAGTTAGATGTAAACCTGGATACCATAAGTACAAAGGTGAATTCAGCGCTGACACGACTGGAGAAGAAGTATAACGTGACGCTGGCTCTCTACCAGCGGTTTGAGAAaaCATGCAAAAAAATCTTTGCTATGGTTTCTGATGACCAGGAGAGGGAGACGATGCGGAGCTGCTGGACAATGTTTCTTTTGGCCAAAGGAAGGGCCTTGCAGATGGAGGATGACCTGGTCATATCATTCCAGTTGCTGCTTTGTACACTGGAGTCATTCATCAAGCGCTGCCCTCCAGACCTTCTGCAGCCTCTTTACAaATCAGCTATCAGCAAAGTTCAGAGCCCTCCAACACGAACATCACGCCGCAACCAGAGCAAAGCCAAATTCCGACCTCCGGAGCCGGAGGTGGATTTGCAGCTTCTCAAAACCTTGTGCGAAGAGAATGAATGCAATGCAGAAGAGGTGAAGAATGTATACCAGACCAGTTTCTCCACTTTCCTGGACTCGCTGGATTTTTCGAGATCTTCAGATTTTCCTCAGGCGAATGACCTCAACCAACAATATGAAGAGCACTACCTCAAGAGTAGAGACATCGATGGACGGCTGTTTTTTGATGGAGATGAGACAGTTCTTCTGCCTAAAGTCGAAAtatCACAGGTGGAGAGAACGCCAAAAAAGAACTTGCCAGATGAAGAGGTACTCATCCCTCCCCAGACTCCAATCAGAGCTGCCATGACCTCCATCCAGCAGTTGAGGGGTGATCTCACCTCCAGTGGGGATCAGCCATCTACTAACCTGGCTACGTATTTCAAAAATTGCACCGTGGACCCAACGCAGGCTGTGCTGAAGCGGTTGGAGACACTCGGACAGGCGTTCAGCCAAAGGTTTGGTCAGGCAGTCGGCCCGCGCTGTGTAGTACTTGGTTGGCAGaGATTTAAACTTGGTGTCAGACTGTATTATAAAGTCATGGAGGCAATGCTGAAATCGGAAGAGAAGCGActgtctgtacaaaatttcaGTAAACTCCTCAATGACTCCACATTCCACACATCACTGCTGGCCTGTGCTTTGGAGGTGGTGATGGCAACATATGGAGAGAGCAGTTTTAAAACTGGGGGATACAAccatggtggtggtggtggtggtgatccAGTTGAAACGGACGTGTGTTTCCCCTGGATATTGGATGTGGTCAACCTGGCTGCTTTTGACTTCTACAAAGTCATTGAGAGTTTCATTAAGGCCGAGCCCACTCTGAGCAAAGATATCGTCAAACATCTGGAGACCTGCGAGAACCTCATCATGGAGAGGATTGCATGGAGGACGGACTCCCCACTGTTTGAGCTGCTGACACAGGAGCATGAGGGCGGAGCAGCAGAGCAGGTGGAGACCCCAGCCAGTTTCAGCCAACCACTGCAGCACAACCACACCGCAGCTGACCTATACCTGTCCCCCATGCGTCCAGGCCTTCGTGTCTTGCCTCCCGAGTCCCCGGCCACGCCCAGCTCTCAAGCTGCCTCTCAGCCTCCGGCCCAGCCTGCCGGCCAGACTCCACGTCACCCAAAGTCCAACTCTCTCAGCCTCTtctataaaaaatTGTACCGCCTGGCCTACACTAGGCTGAAGATACTCTGCTCCTACCTGCTGTCCTCCCACCCTGAACTGGAGCCCATCATATGGACCCTGTTCCAGCACACTCTGCAGCACGAGCACGAGCTGATGAGAGACCGCCACCTCGACCAGTTGATGATGTCAGCCATGTATGCCATATGTAAAGTGAAGAGTGTTGATCTGCGCTTCAAGACCATTGTCACAGCATACAAGAACATGCCCAACACCAACCAGGAGACCTTTAAGCATGTGTTGATCACTGAGGGCCACTATGACTCCATCATTGTCTTCTACAACCAAGTGTTCATGCAGAAGCTGAAAACCAACATCCTGCAGTATGCGTCTACTAGGcCACCCACCCTCTCTCCAATCCCACAAATACCACGCAGCCCCTACAAGTTCCCCAATTCACCTCTACGAGTGCCTGGGAGCAACAACGTGTATATCTCCCCTCTGAAAAGCCCACGCATGTCCCCGGGTATCATGACTCCTCGCTCCAGAATGCTGGTATCAATCGGGGAATCTTTCGGGCTATCCAATCGGTTCCAGAAGATCAACCAGATGGTCAACAGCAGTGATCGGTCCTTTAAGAGGACTCTGGATCTCGGCTCCACTCCAAAGCCTCTGAAGAGGTTACGGTTCGATGTGGACGGGCAAGATGAAGCTGATGGCAGCAAATCTGGAGGAGATTCTACACTGATACAAAAGCTTGCAGAGATGAGCTCCACTCGGAGTCGCATGCAGGAGCAGAAGATGAAGGAAGACGCAGAATCAAGGAAGGAGTAACTCTAAAACCTACTGAACTGACCTGCACTGTTTATCACAACGTGAACACTACTTTTTTGTTCACACACAAAGTGAAACATAAGTTTCTCTGTACATGTAGTATTGGATTTTAGTTTGTATTTAACTTTGTCTTTGAGGAGTATTATGTGAATATAGAGGactttctcctctttttttgttgATGCTTTGAGTGTTTTAACTGAATAATGATTGACACCATTGACTTTCATTTGAATTTTGACTTGTTTGAGATTAAGTATGTTTGGTTTTTAGAGTGATATTAATTCTTGGGTGTTATTAGAAATCTTTATTTTGACTCTCTCAGATGTTCTCAATTGTGTAGAGCGTTGTTGAGATAAATTGATGGCTTTCTTGTTAAATAATTGGTTAAAATCATGATCACTCTCCCCAAAAAAGATTCACTGTTGACTTTAGAGGAAAAATAATGTCTTTTCACATAGCAGTTTTACTTTTAAAGTCATATAGATTGCTTGGATAAGTTTAGTTGGTGCCATTAAgtgaaaaaattatatatatatatatatatacacacacacacacacacacctaa

Function

GO:

id name namespace
GO:0021554 optic nerve development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007601 visual perception biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K06618 RB1; retinoblastoma-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227962 lncRNA downstream 91030 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 242269 23450693 ~ 23455066 (-) False mink1
TU227911 lncRNA downstream 242269 23450913 ~ 23455066 (-) False mink1
TU227912 lncRNA downstream 242269 23451122 ~ 23455066 (-) False mink1
TU227917 lncRNA downstream 269274 23427557 ~ 23428061 (-) False slc12a9
TU228084 lncRNA upstream 45669 23763547 ~ 23764139 (-) True G168238
TU228248 lncRNA upstream 387704 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 455948 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 608553 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 611631 24329509 ~ 24330155 (-) True G168452
XM_039778555.1 mRNA downstream 1109 23686225 ~ 23696226 (-) False LOC120544653
XM_039778554.1 mRNA downstream 1109 23686225 ~ 23696226 (-) True LOC120544653
XM_039778558.1 mRNA downstream 18087 23667325 ~ 23679248 (-) True rnf121
XM_039778560.1 mRNA downstream 30210 23665501 ~ 23667125 (-) False LOC120544657
XM_039778060.1 mRNA upstream 889 23718767 ~ 23728561 (-) True slc6a7
XM_039777558.1 mRNA upstream 19193 23737071 ~ 23754730 (-) False taf1
XM_039777557.1 mRNA upstream 19193 23737071 ~ 23754730 (-) False taf1
XM_039777551.1 mRNA upstream 19193 23737071 ~ 23754730 (-) True taf1
XM_039777552.1 mRNA upstream 19888 23737766 ~ 23754731 (-) False taf1
TU227963 other downstream 79214 23617275 ~ 23618121 (-) True G168162
TU227941 other downstream 97061 23596899 ~ 23600274 (-) False rnf167
TU227697 other downstream 544019 23150844 ~ 23153316 (-) True LOC120543557
TU227610 other downstream 886883 22809714 ~ 22810452 (-) True G167902
TU227368 other downstream 1228742 22466583 ~ 22468593 (-) False mepcea
TU228118 other upstream 85673 23803551 ~ 23811763 (-) False nlgn3b
TU228135 other upstream 203382 23921260 ~ 23925815 (-) False thoc2
TU228137 other upstream 203382 23921260 ~ 23925815 (-) False thoc2
XR_005636406.1 other upstream 204755 23922633 ~ 23948860 (-) False thoc2
TU228215 other upstream 256676 23974554 ~ 23976321 (-) True LOC120544713

Expression Profile