RNA id: XM_039778679.1


Basic Information

Item Value
RNA id XM_039778679.1
length 2187
RNA type mRNA
GC content 0.45
exon number 5
gene id serpinh1a
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30903631 ~ 30910364 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCCTGGATGGAAGATTCCAGTGCAGAGATTTTACTGCAGCTGTCTCAGACAACTCTGTTTCTGACCATTACATACGGTAACTTTACATAGAGGAGGTCAGCGCTGGGGGATCTATTTGCGAGCAGCTTGAGGGTAACCATCTGAATTATTGAAAGAGGCTAATAAGCACTACACAGAGATGTGGGTGACAAACCTGGTAGCCCTGGTCCTCGTGGCCACTTCAGCTTCAGCTGCCACCTCGGCTTCACCAGACAAAGTGCTGAGTAACCACGCCACCATCCTGGCTGACAACAGTGCCGAGTTGGCTTTTGGTCTCTACCAGAACATTGCTAAGGAAAAAGATGTAGAAAACATCCTCTTTTCCCCTGTAGTAGTGGCTTCCTCTCTGGGTCTGGTGGCTCTCGGGGGCAAAGCCTCCACCGCCTCTCAGGTAAAAAGCATTCTGAATGCAGCTAAGGTTAAAGATGAGCAGCTGCACGCTGGTCTGGCCGAGCTCCTGACTGAGGTGAGCGACCCAAAGACCCGCAACGTCACCTGGAAGATTAGCAACCGCCTGTATGGACCCAGCTCGGTCACCTTTGTGGAAGATTTTGTCAAGAGCAGCAAGAAGCACTATAATTGTGACCACTCCAAGATCAACTTCAGCGATAAGAAGAGCGCGGTGAGCTCCATCAACGAGTGGGCGGCCAGTTCTACTGATGGCAAACTGCCCGAGGTCACCAAGGATGTAGAAAAGACCGACGGGGCCATGATCATCAATGCTATGTTTTTCAAACCTCACTGGGATGAGCAGTTCCATCATAAGATGGTGGACAACCGTGGCTTCATGGTGTCCCGTAGCTACACTGTTTCAGTACAGATGATGCACCGCACCGGTCTCTATGGCTTCTATGATGACACGACCAATAAGTTAAATATCCTGAGCATGCCTCTGGCTCATAAGAAGTCCACTGTGGTGTTCATCATGCCTTACCATACGGAACCTCTGGACAGAGTGGAGAAGATGCTGACCAAGAAGCAGCTGGATACGTGGATGGGCAAGCTGCAACAGACAGCAATAGCCGTGTCTCTGCCCAAAGTCAGCATGGAAGTCAGTCACAACCTGCAGAAAAGCCTTGGGGAGTTGGGCCTGACAGAGGCTGTGGACAAATCCAAAGCTGACTTGTCCAAGATCTCCGGGAAGAAGGGTCTCTACCTGGCCAGTGTGTTCCACGCCTCTGCCTTGGAATGGGGAACTGATGGCAACGAAATGGACATGAGCGTCTTCAGCACAGACAAGCTGAAAAACCCTAAACTGTTCTACGCCGACCACCCTTTCATCTTCCTAGTGAAGGACCAGAAAACAAACTCCATCCTGTTCATTGGCAGGATGGTTAGGCCAAAGGGCGATAAGATGAGAGATGAATTGTAACCACATTAAGTTAACAGGCTGAatgcgtgtgtgagtgtaaaTTTTCTATTGCAATATGCCGAGAGAAGTGCAAATGCAGGTGTCATATCGCACGAGTGCATTCCTTTACCTCACATGCCAACAGCATTCCACAATACACGGCTGAAGAGATGTGTTTAAACATTTTATCCTGTGTTTTAGTGAGCAACGCATTGTGCACACCCTTCCTTTTTAACTTGAAGATTATTTGATATCACTATGTGGCTTCTTTTTGCATTGGCAGATCACATTATGGACTTAAGACTTACATTAAGTATAATTTCCCTGATTAATGCCTAAAATGTAAATGCAGGAAGACAATACCTGTGCCAGCACAAAAAAGGTTTCTGTTGACAAGTCTTAACAGTCTTTGTAAAAGGTGTACAACAATCTTACTTTTGTAGAGATTTTATGGTGCCTGTTGTTTAATTTAACAATACGTTTTAGTTTGTCAAGCACGGCTGCTTTCAATTTGTTAACTCAAAGGATCTTCACAATTGTTTGCCCATCATTTGCACTGCTTTCCACCACAAGCATATatatttttaaccaaaaggctacattgctgtttttcttattattgaCCCTCCCTGAATGCACTGATCTGCACTGGCAAACAAACCAAATTATGGCTGATTTAATAAGAACTATCTATGATACAATGTGTGCACACATGATTTGACAATTTCAAAATATGGTTTTAGACTGTTAGAAATTTTCCAATTATTTTGCAATAAAAGTGTGAGAAAAACCAAA

Function

GO: NA

KEGG:

id description
K09501 SERPINH1, HSP47; serpin peptidase inhibitor, clade H, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230633 lncRNA downstream 14056 30888006 ~ 30889575 (-) True G170078
TU230632 lncRNA downstream 14180 30888006 ~ 30889451 (-) False G170078
XR_005636409.1 lncRNA downstream 111755 30788469 ~ 30791876 (-) True LOC120543896
TU230604 lncRNA downstream 171549 30720942 ~ 30732082 (-) False LOC120575604
TU230641 lncRNA upstream 3338 30913702 ~ 30914239 (-) True G170085
TU230657 lncRNA upstream 26542 30936906 ~ 30937273 (-) True G170092
TU230687 lncRNA upstream 111540 31021904 ~ 31022240 (-) True G170106
TU230717 lncRNA upstream 197678 31108042 ~ 31110208 (-) True G170129
TU230731 lncRNA upstream 224527 31134891 ~ 31135385 (-) True G170138
XM_039778152.1 mRNA downstream 2070 30890492 ~ 30901561 (-) True acer3
XM_039776748.1 mRNA downstream 27871 30859601 ~ 30875760 (-) True LOC120543607
XM_039777251.1 mRNA downstream 46411 30853556 ~ 30857220 (-) True LOC120543889
XM_039777258.1 mRNA downstream 52577 30846998 ~ 30851054 (-) True LOC120543892
XM_039777252.1 mRNA downstream 73322 30763992 ~ 30830309 (-) False LOC120543890
XM_039777993.1 mRNA upstream 56267 30966631 ~ 30988577 (-) False samsn1b
XM_039777996.1 mRNA upstream 56267 30966631 ~ 30984938 (-) False samsn1b
XM_039777995.1 mRNA upstream 56267 30966631 ~ 30984938 (-) False samsn1b
XM_039777992.1 mRNA upstream 56267 30966631 ~ 30984938 (-) False samsn1b
XM_039777994.1 mRNA upstream 56267 30966631 ~ 30984938 (-) False samsn1b
TU230602 other downstream 52618 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 73688 30829067 ~ 30829943 (-) False LOC120543890
TU230595 other downstream 164364 30738055 ~ 30739267 (-) False LOC120543890
TU230450 other downstream 488938 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230433 other downstream 593044 30306849 ~ 30310587 (-) False LOC120543993
TU230664 other upstream 47137 30957501 ~ 30958498 (-) True G170098
TU231114 other upstream 1291345 32201709 ~ 32202206 (-) True G170463
TU231185 other upstream 1532922 32443286 ~ 32491305 (-) True LOC120543978
XR_005636561.1 other upstream 3368938 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 3370561 34280925 ~ 34281017 (-) True LOC120544757

Expression Profile