RNA id: TU278110


Basic Information

Item Value
RNA id TU278110
length 2542
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G205344
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22930930 ~ 22947866 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATCTTTCACAGGTTACACAGATTTATTGCACAAAACATTTCAGTTGTCTGAAATCTGAAGTGCTGTTTAGTAAATTAACTGATGTAATTTGTAATAACCTCCTTAATTTGGTAAACGTAAAGATATCGGAAATGTATCTTGTTCCTTCTTGATTTTCAGCGGATGAAGCTAGTCAGCCATCCCACTGCTGCTCCAGCTCCAACCACAGCTGCAGTGGCAGCTCCTGACAGACCAGCTGCACCTACTGCTGCCTGCAAAACAGCCACTGTACTTCCTGCTGCCACTGCTCCTCCGTTAGCGACTGCAGCAGCCGACATCATGCCGGCAGCATAGGAGCCTGCTGCTATTCCAGCTGAGGTGAAACCTATGGCTCCCAGAACAACAGGAGCCCCGACCACACTAACTACTGCACATggacaacacaacacagcagaGGGAACTTTGTTGTTAGTGATAGTGTGCTAATCGGTCAGCTCACTTTAAAATGGATCATGCATGTATAAGTTTAACATGTAAATGGTGTTAAAAATCAGTTTAAAAACGTAAACAAAGGTGGTCCATAAAGTCTGGACGTTACAAAGTCCTACCTGCACCTCCTACAATGGCAGCAGCTGTCCCTGAAACAAAAGATGAAAGCCAAAATCCACCTTTACAGTCCATCTGGCTTAATCAATGACATTTGCTTTGGTTTCTCACATTATAACATGTTTTTTAAGGAAAGCTTATCAGTAAAAGTATCAGTACTTTCAAGAATTTTGTAGGTATCATCTAGGGTGTAATTTCCAATGGGGACAGGGAGGACATGTCCCCCCCCACTTTTCAAACTCCTgtttgtgtccccccccccacacacactttcaaattCGGttgatgttattttatttaaaagtctCTGTGATCTGcccctattttaaacaataaagaaagtaagacatctttttctttcttattttctgGAATAATCTATAATTACGATCAACTTAATTATTTTCCGGATTTTTAATCATCATAGTTGCTAAACTTATgtagaaatgcaggaaataTGATTCAAATAGAAAatggttttttgggggggcagaGGACCCCCAGACCTCCCCTGTTTTGTGTCCCCCCTACTTCTCAAACCAAAGTCACACTCTTGAGTATCATCAAATGACCAGCAATACTCACCAGCAGGGCCCATCTTGTTTATAGGTCTGACGAACTGTTCTGAGAAACCACACTGTTggaatcaaaacaaaaaaggggGTCCCTTGGTGTGTCATCGAAGAACAGGAAGTGAAACTTAAACTGTTCTCTTTAATCATAACAAAAAAGACAGAAGTCTTTAATACGTCAATGATTAACATTTCCGGTGTGACGTGTCAAAATGATTGTTCACAATGCTTTACTGATAGCTCcaaaaccatagatatagaacaaaaTAAACTGTTTTATATCTATGTCTAAAACCGTACCgtgaacacactgtaacaacACGCTAGAAGTgaagaagaaaacaacaaatCTCAATGTTTTACTTGTTGAAACAAAATGACAAACTGATAGCACGCTATAACGTTAATTGATGATAAAGCTTGGCTATATTTATAATTACAATACACATTAAAACAGCGAAATAGAATAAATCTTTAATGTCCACAGACAACATCTCAGACATAATAAGTGGAGCATAAAAAgatgaaatgaaacaaaaaaaaaagaatatcaggataaaaaaaaagaataaatacgcttaaatacattaaaatagcaGCTCAGTTTGATGTTGTCATTTGGTCTGGATGAGGATACTGATGGCATTTGGAATAAAGGATTTTTTAAATACACGTTTTGCCAGAGGCACTCTGAGGCGTCTCCCAGACTGCAGGAGCTCAAAATGGCTGGAAAGAGGGTGGTATATCTGCAGTGATTTTCCTAGCGTTCTTCCTCATTCTGTCAGTGTATATTTGGGTCAGATGTTTTGGGGGGTTTCCCAATATTTTGCTAGCCATTGACACTATTCTGTTAAGCTTGTTCTTGAGTTTGCAGCTCAAATGGTCAAACCAAGCAGAAATTAGCTAGCTAAGACAAACAAAATTCAGCTCCAACCCTAATGTTCCAATGATGATTCGCCGCCCCATATACTACTCCAATACACACTTCATAGTTAGGCATTGCTTCAGACACGTAACAGGAATGCAAACTGTTAACGAAATTATGGAAAATTAACCATAAAGTTAGCACAAACATGCTCACCCAACcaagcaaaactacaaaaaatctttttaatgTCACTTAGGATACGAATTATTGACAAATCGTGTGCCCTTATGCTAATACACATTAGCACAAAAGGTACAAATCCTAAACGCACCTTCTTCTGGAAGACAGCCGAGAAGTTAAAATGCCCCTCAGTCCGCAGACAGCCGCCTCGACCAGGTCCCGAGCATTGACATAAAATGGACCAACGGTCCCGAGTGACACAGCAGCCGTTTTGACGTCTTTCCGGAACTgcaccttcaaaataaaggtaCCAGCCTTGCTAATGTAATTTACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278111 lncRNA upstream 9079 22934732 ~ 22935857 (+) False G205344
TU278113 lncRNA upstream 16231 22925253 ~ 22928705 (+) False G205345
TU278114 lncRNA upstream 16231 22925253 ~ 22928705 (+) True G205345
TU278119 lncRNA upstream 22297 22922315 ~ 22922639 (+) True G205349
TU278029 lncRNA upstream 100550 22832052 ~ 22844386 (+) True G205293
TU278133 lncRNA downstream 31220 22979086 ~ 23003616 (+) True G205359
TU278254 lncRNA downstream 392713 23340579 ~ 23341739 (+) True G205461
TU278257 lncRNA downstream 396414 23344280 ~ 23344666 (+) True G205463
TU278258 lncRNA downstream 396861 23344727 ~ 23346941 (+) True G205464
TU278273 lncRNA downstream 545117 23492983 ~ 23493222 (+) True G205477
XM_039786761.1 mRNA upstream 25671 22913711 ~ 22919265 (+) True LOC120549680
XM_039785121.1 mRNA upstream 39643 22889991 ~ 22905293 (+) True LOC120548707
XM_039786980.1 mRNA upstream 68222 22873591 ~ 22876714 (+) True LOC120549820
XM_039785317.1 mRNA upstream 101808 22800265 ~ 22843128 (+) False si:dkey-157l19.2
XM_039786762.1 mRNA downstream 3325 22951191 ~ 22955699 (+) True LOC120549681
XM_039787071.1 mRNA downstream 569986 23517852 ~ 23528486 (+) False LOC120549876
XM_039787072.1 mRNA downstream 570311 23518177 ~ 23528486 (+) True LOC120549876
XM_039787070.1 mRNA downstream 583042 23530908 ~ 23552582 (+) True si:ch211-195o20.7
XM_039785184.1 mRNA downstream 605770 23553636 ~ 23569842 (+) True LOC120548746
TU278034 other upstream 98528 22833987 ~ 22846408 (+) True G205294
TU277824 other upstream 416187 22525161 ~ 22528749 (+) False srp14
TU277801 other upstream 579036 22363688 ~ 22365900 (+) True gchfr
TU277798 other upstream 579084 22363688 ~ 22365852 (+) False gchfr
TU277797 other upstream 579146 22363688 ~ 22365790 (+) False gchfr
TU278270 other downstream 583197 23531063 ~ 23535670 (+) False si:ch211-195o20.7
TU278518 other downstream 1381247 24329113 ~ 24355916 (+) False ralgapa2
XR_005637306.1 other downstream 1381281 24329147 ~ 24443950 (+) False ralgapa2
TU278672 other downstream 1809995 24757861 ~ 24759494 (+) True mgst3b
unassigned_transcript_1160 other downstream 2128917 25076783 ~ 25076864 (+) True trnas-gcu_19

Expression Profile