RNA id: XM_039788463.1


Basic Information

Item Value
RNA id XM_039788463.1
length 2473
RNA type mRNA
GC content 0.40
exon number 13
gene id LOC120551213
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9974695 ~ 9995625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTCATTAACTGTTCAGACCTCTTAGAGTCATGATGCTTGCAGGTTTCATCTTTCTGCTCCTCGTCACAGGTGGAAGTACCTCCAATTACACAGAGCAACCAGAGCTTCCTGGCAATCAACAGATGTTCAATTACAGCTTTGAGGAAAGTGGAAGTACCTCCAATTACACTGCAACATTACAACCAGAGCTTCAAGAAAACTCCAATCAGAGCCTTAAGAACGTGAGTGGGGAGTCCTCCAAGGGTAACTGTACTTATCGGGATATTTTAAGGCATTTGAACTTAAAAGAAGGAAATGAGAACTCCATGACTCAGCCTGGTGGTGATAAATCACCCACAACAGTTTATCTGGAACTACTACTCTATGCCATTCTAGATGTGaatGAGAAGGACCAGAAATTTGTTTCTTACATTTGGATTGATATGTATTGGAAGGATGACAACATTTCTTGGAATCCAGATGAATTCTGTGGTATAAAGGAAATTCATCTTCCTGCTGAAAAAGTGTGGAAGCCAGATCTAACTATTGAAGAGATGACAGAAAAGGACAAGGCCCTTCCAAGTCCATATCTCGTCATTATGTCGGAAGGTGTGATCATTCGCAGGGATGACATGTTGGTGATCAGCACCTGCACGATGGAAGTTTACAGATTTCCCTTTGACTTTCAGAGCTGTACCCTCTCTTTAAAGTCTATCATACACTCTGACAGGTATATAAAGCTTGAAGCGGGAGCTGAATCTGAATTGACCACAATGTGGTCTAAGGAGATGATGCGGACCCAGTCCGAGTGGTTGTTTATCAACATGACAATCAACCACAAAACTGTCAACAATTTTGGTTTAAACCAAAGCATGTTGATTTACACTATCAACATGAAGAGGCGGTCTGCACTTTACGTGGTTAACTTCTTGGCCCCCATCATGTTCTTCTTTTGTCTGGACTTGGCCTCATTCCTGATCTCGGACAGCGGAGGAGAGAAGCTCAGCTTCAAGGTCACTGTGCTGCTTGCTGTCACTGTGATGCAGCTTATTCTCAATGAGATTCTGCCTTCCTCGTCAGACAGGATTCCTCTTATAGCGGTCTACTGCATTGGGATGTTTGGATTGATGCTGCTAAGCCTAATGGAGACGATTTTGGTGATGCATCTAATGGAAAAAGACTCTAAAGACCAAAGCCTGAGTGAGGACTGTGGGGACAAACAGGGCAAAGTCAGCTTCCGCAACTGTTGTAGAGATGTTAAGAAATTGACTCACGTCTGTCACATCTGTGATGTGTTTCCTGGTGAAACGCCATCTGGAATGCTGCCGGTGGCCAAAGAGGGTAGCAGCCTGACGGAGGAGTCCCATGCCTCAGATGAGCTAAGTGAGGCGGTGAAAGCTCTGACTCTGCTCCTTAGCaacagggaggaagagaggatgCCCGGCTACTGGACCAGAGTGACTAAAACAATCAACAaaattttcttcattttctatGTCATAGCTGCCTTTGTGTTTTTactctgtttgtttttcatttggaAAGAAAACAGGTGATAATAATTCAGATGATTGAAAACAAGTCATTCTGCAGGTTCATTTGGGCTAGAGGTGAAGCTGTGCTGAAATAAAGTCTCTGCCCCCAATTTTGGTGTCACTAACCACAACCTTCTTCTGCATGAGCCAAGCTAATGATCAAAGGTGTACTTGGCTGTTCAGGTAGTATTCAATCCTTCAGTGGTATTGCAGCTGCCATTTGCATGTTTCACACACAGTGGTTCATATCAAACACACATGTTGTCTTGTCATATTCTAATACACTAATCTGCAATCAATGGGTAGATTTATGTCTTTGCTATGTAATAAAATATACACTTTTAGTTATCAAGCATGCAGGTCAAAATTACATGTTTTCCTAATCTTTATATGGGCAATTCTTATAATCCACCCCAAAACATTAAAGTGTGTACAATTCTAAATATGCAATCAAGTGCATGGAATTTCATATCATACATGTTCTCACAGCTTTGTTTTGTTCCTGCAGGATTCCTATCTAAGCTCTTTTCATAAAATTACATTCCTTTTAACCATTGCGCTAACATGACTAAAACAAATATCCAAAAATCGATGCAGCAGGTCCCATAGTTTGTAACGCATgctttcttttaaaaatgtgtagtAATTTGACTTGGCTTCTCCAGAGCAAAAGAAGTCAATGTACAACATTTTCTCTTCAGAACCGGTATAGAAAGCACATATCAGGACTGTTCCATTATGAATACATGAAGCAGAGTAATGCAGCTGTGTAAGAACACCACAGAACGAACACAATAATACCTGATAGAATAACTGTAAAACACATTAATTTCAGAATATTATAGATGTGTTTCAGAATGTTAAAGAAACAATAGACCAGTTTTAAATCTACACTACACAACACTACGTAGCTTTATAGCTATCAGACTCTGTAATAAACAATAACAACTAAAACAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286175 lncRNA downstream 52548 9921884 ~ 9922147 (-) True G211203
TU286076 lncRNA downstream 56082 9918410 ~ 9918613 (-) True G211125
TU286057 lncRNA downstream 73911 9868662 ~ 9900784 (-) True G211112
TU286065 lncRNA downstream 93166 9879403 ~ 9881529 (-) True G211117
TU285990 lncRNA downstream 269761 9703546 ~ 9704934 (-) True G211063
TU286230 lncRNA upstream 13065 10008690 ~ 10008932 (-) True G211219
TU286214 lncRNA upstream 18273 10013898 ~ 10080626 (-) True G211213
TU286236 lncRNA upstream 86252 10081877 ~ 10082332 (-) False LOC120551239
XR_005637847.1 lncRNA upstream 86334 10081959 ~ 10082734 (-) True LOC120551239
TU286237 lncRNA upstream 87922 10083547 ~ 10083816 (-) True G211225
XM_039788483.1 mRNA downstream 17435 9948870 ~ 9957260 (-) False lrrc59
XM_039788482.1 mRNA downstream 17435 9948870 ~ 9957260 (-) True lrrc59
XM_039788376.1 mRNA downstream 57213 9913442 ~ 9917482 (-) True LOC120551164
XM_039788378.1 mRNA downstream 62902 9907938 ~ 9911793 (-) True zgc:112285
XM_039788732.1 mRNA downstream 107114 9858082 ~ 9867581 (-) False bicral
XM_039788462.1 mRNA upstream 2239 9997864 ~ 10007609 (-) True LOC120551212
XM_039788465.1 mRNA upstream 25766 10021391 ~ 10028848 (-) True LOC120551215
XM_039788468.1 mRNA upstream 46384 10042009 ~ 10051395 (-) True LOC120551218
XM_039788469.1 mRNA upstream 48253 10043878 ~ 10051395 (-) False LOC120551218
XM_039788441.1 mRNA upstream 57623 10053248 ~ 10076987 (-) False rnf157
TU286058 other downstream 80282 9887314 ~ 9894413 (-) True G211113
TU285814 other downstream 1381631 8589241 ~ 8593064 (-) True G210928
TU285754 other downstream 1689964 8282960 ~ 8284731 (-) False LOC120551255
TU285591 other downstream 1912445 8059323 ~ 8062250 (-) True G210761
unassigned_transcript_1161 other downstream 2012157 7962467 ~ 7962538 (-) True trnac-gca_33
XR_005637844.1 other upstream 174089 10169714 ~ 10171185 (-) True LOC120551227
TU286556 other upstream 331042 10326667 ~ 10329408 (-) True G211451
unassigned_transcript_1163 other upstream 346892 10342517 ~ 10342598 (-) True trnal-uag_19
unassigned_transcript_1165 other upstream 861117 10856742 ~ 10856835 (-) True trnai-uau_4
XR_005637842.1 other upstream 869470 10865095 ~ 10891987 (-) False mta3

Expression Profile