RNA id: TU286214


Basic Information

Item Value
RNA id TU286214
length 687
lncRNA type read_through
GC content 0.41
exon number 2
gene id G211213
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10013898 ~ 10080626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACTTGAACAACAAAGATGTTTATTAGCATTCACCTAAAGCAATTACAAGACATTTGAGAGGTTCACAGAGgaatgaaatacacacacaaaaaaaaaatcattcattaGGCAGCCTGGACTGCCCTTTAAACTCTTCACTGGACCCAATTTCAAAAAAGCAAGCAAACCAGTTTTCAAAAGTGGATAAACcacagaggagaagaggagggagaatacagagaaaaagaaaggaggaaaTAATCTGTATAGCACATGGAGGGAAGGAGAGGTCACAAGACAGGAGAGGATGGATGATCTGCCACACCTGTGAGCTTACAAACCAGCAAACGGCAGCGGAGGGTCGAGCCCCGGAACAGGGCCGGGCACTCAGCACCGCAACACGCCACACCATGTCACCACCGCACCGCACCGCATCTTAACAGCTAACCAGCATTACTCAACTGCTACACAACTGCGCCTAGTGCACAAAAGATACACAAGAAAGAGGGTTAGAGTCATAGGAAAGCAACTTTAACCAGACAGAAAATAGAGATTTGAcgacagaaaagaaaatgtatgctGCCGGATTAGCAAATTACAAATGAATTGGCATAGCGATATTAAGGTTTTGCTTTTATGTCACTAAACAGTAGGGCATttttcaaaagaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286230 lncRNA downstream 4966 10008690 ~ 10008932 (-) True G211219
TU286175 lncRNA downstream 91751 9921884 ~ 9922147 (-) True G211203
TU286076 lncRNA downstream 95285 9918410 ~ 9918613 (-) True G211125
TU286057 lncRNA downstream 113114 9868662 ~ 9900784 (-) True G211112
TU286065 lncRNA downstream 132369 9879403 ~ 9881529 (-) True G211117
TU286236 lncRNA upstream 1251 10081877 ~ 10082332 (-) False LOC120551239
XR_005637847.1 lncRNA upstream 1333 10081959 ~ 10082734 (-) True LOC120551239
TU286237 lncRNA upstream 2921 10083547 ~ 10083816 (-) True G211225
TU286222 lncRNA upstream 3949 10084575 ~ 10090067 (-) True G211214
TU286241 lncRNA upstream 59967 10140593 ~ 10141696 (-) True G211229
XM_039788462.1 mRNA downstream 6289 9997864 ~ 10007609 (-) True LOC120551212
XM_039788463.1 mRNA downstream 18273 9974695 ~ 9995625 (-) True LOC120551213
XM_039788483.1 mRNA downstream 56638 9948870 ~ 9957260 (-) False lrrc59
XM_039788482.1 mRNA downstream 56638 9948870 ~ 9957260 (-) True lrrc59
XM_039788376.1 mRNA downstream 96416 9913442 ~ 9917482 (-) True LOC120551164
XM_039788484.1 mRNA upstream 13268 10093894 ~ 10107221 (-) True LOC120551225
XM_039788486.1 mRNA upstream 13269 10093895 ~ 10108329 (-) False LOC120551225
XM_039788485.1 mRNA upstream 13269 10093895 ~ 10108329 (-) False LOC120551225
XM_039788480.1 mRNA upstream 33765 10114391 ~ 10128026 (-) False LOC120551222
XM_039788479.1 mRNA upstream 33765 10114391 ~ 10127656 (-) True LOC120551222
TU286058 other downstream 119485 9887314 ~ 9894413 (-) True G211113
TU285814 other downstream 1420834 8589241 ~ 8593064 (-) True G210928
TU285754 other downstream 1729167 8282960 ~ 8284731 (-) False LOC120551255
TU285591 other downstream 1951648 8059323 ~ 8062250 (-) True G210761
unassigned_transcript_1161 other downstream 2051360 7962467 ~ 7962538 (-) True trnac-gca_33
XR_005637844.1 other upstream 89088 10169714 ~ 10171185 (-) True LOC120551227
TU286556 other upstream 246041 10326667 ~ 10329408 (-) True G211451
unassigned_transcript_1163 other upstream 261891 10342517 ~ 10342598 (-) True trnal-uag_19
unassigned_transcript_1165 other upstream 776116 10856742 ~ 10856835 (-) True trnai-uau_4
XR_005637842.1 other upstream 784469 10865095 ~ 10891987 (-) False mta3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2134140 True 3923 TUCP 0.47 2 NC_048587.1 40179829 ~ 40185212 (-)