RNA id: XM_039792046.1


Basic Information

Item Value
RNA id XM_039792046.1
length 5828
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC120553524
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25402355 ~ 25491732 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACTCAGTCGGTCACTTAGGAGAGCGGACGGATGCTAATTGACACTTTTTTGTTCTATcattacataaaaacaaaacccaTTTGGCCTTCAGTAACAGTGACTGACTGATTGGAGTGAACGGAGGACTAGATTTGAATATCCCGCTCTGCCAGGCCAGTCCTCTGAGCTCCAACGAGGCGGAGAATGAGATTCACAACCAGCTCTCTCCCGTCCAGCACAGGCAGCCACGGCGAGCTCTGCCGGCACGGCTCACTGAAAACCAACTAGCGCTGGAACAACATATAAAAGCATCTTCGGAATACTATATACAGCTTTCATTAACGCTAGGAGCCGATACAGAACAACAGTGTCGCCGAGTCTAGCATTTAATCCAGTTCCCCCCCTGGAGATGCGTCGCTTGGAGAACTATTAGCGGACAGCGCTGCACATCGAAGCCGGGATGAGTGGGAGCTCCGCGGTGTCCGGCGCGGCGCCCTGCCGCTTCGCCCATTACTTTGCTGTTTGTGGGATAGACACGGAAACTGGACTGGAACCGGACGAACTAGCAGCTTTGTACCAATGGCTAGAAGCAGACCGCCAAGGCAGGGATCCAGATACTGCAGCCACAGGCGAAAACTTTGAGCAGAGCCCCCTGAAGAGGACGTTCAAGTCCAAAGTTTTGGCCCGCTACCCTCAGAACGTGGAGTGGAATCCCTTCGATCAGGATGCTGTCAACATGCTGTGTATGCCTAAAGGCCTGTCGTTCAGGACCCAGGCGGACCAGCGTGATCCACAGTTCCACTCCTTCATCATCACGAGGGAAGATGGCTCTCGGACCTACGGCTTCGTTCACACCTTCTACGAGGAGGTGACCAGCCCGCAGATCTGCTCTGCCATGCACACCCTCTACCAGATGCACAACGCAGAGAGCACcccttcatcctcctcctcctcttcctccagcaTGGACTCCCTCGCCAGCAGTTTAGACGAGGCCGACTCCCCCGCCTCCTCAGCCTCCTCCTCTCGCCGGGCGGGTGGCTACGACTCGTCGCGGGACACCCTCTACGTGTCCAAGGCCTTGTGTCTGATCACGCCCATGCCCTTCATGCACGCCTGCCGGCGCTTCCTGTCTCAGCTGCACAGGGCCGTTACGGCAGACACAGCCCCCCCGCTGCCGCTGGAGAGCTACGTTCACAACATCCTGTACGAGGTGCCGCTGCCCGCTCCGGGACGCTCGCTCAAGTTCCACGGCGTATACGAGCCCATCGTGTGCCAGAGGCCCGGGCTAGCGGAGCTGCAGCTGGCCGACTTCCCGCTCGCAGAGGCCTTTACTCTGCTCGGAGCGGAGAACCTGGTCCAGGTGTTCACCTGCACCCTGCTGGAGATGCAGATCCTTCTCTACTCACACGACTACCAGCGATTGATGACGGTGGCCGAGGGCATCACCACCCTGCTGTTTCCCTTCCAGTGGCAGCATGTCTACGTTCCCATCCTGCCGGCCTCTCTCCTTCACTTCCTGGATGCTCCTGTTCCCTACCTGATGGGCCTGCAGTCAAAAGAGGGCACAGACCGCTCCAAACTGGAGCTTCCTCAGGAGGCCAACCTGTGTTTTGTAGACATTGACAACCACTACATCGAGCTTCCAGAGGACTTTCCACAGTTCCCCAATAAGACCGAGTTAATCCAGGAGCTCGGCGAGGTGCTGCTGAGTTTTGGCCTTTCTGCCAACACCGGGGCCCCACCACGGACCCGCACCAGTCCCAGCAGCGCTCCCGGCAGCACCCCGTCCACCCCTGGCAGGGAGCGTAAGACTGTGGCTCTCCGGCAGCTGGAGGACGACGGGCGCAACGGAAACCTCGCGGTGGAGGAGCTGGCtgtgctggagctgctgcagggAAACGCCACCCTGGAAAGACTGCAAGCGCTGACAAAACGCACCGGGGTGACAGTGGCCCGCGTGGACGCCCTGAGGGCCGGAGTCAAAGCTCAGGGCACAGAGGGGCAAGGAGGCCGGACAGCAGCTGAAGAGGAGGAGCTTAGGAATGCCAAGTTGAACGTCCAGCTGAGGGAGGTGTTCGCCAGCCGCTTCACCACCATGTTTGCTGACTACGAAGCCTTTGTCATCCAGAGCGCCCCGGACCTGGAGTCCTGGCTCACCAATAGGGAGCAGATGCACAACTTCGACAAGGCCTCGTTCCTGTCGGACCAGCCAGAGCCCTACCTGCCCTTCCTCTCCCACTTCATCGAGACACAGATGTTTGCCACCTTCATCGACAACAAGATCATGTCCCAGTGGGAGGAGAAGGAGCCGCTGCTCCGCGTCTTCGACGCTCGCATCGACAAGGCCCGCCTCTACAACGTCCGCGCGCCCAGCCACCGATCCTCCAGCTACCAGAGGTGCTCCATCCTCAAGGAGTCTGCTCAGGCCATTGAGCAGCGACTGATGAAGATCGACCACACCGCCATCCACCCCCACCTGCTGGACATGAAGATCGGTCAGGGCAAATACGCGCAGGGATTCTTCCCCAAACTGCAGGCTGACGTGCTCAACGCGGGGCCGACCAATAACAAGTGGTCTCATAGGACGGCGACAGCTCAACGAAGGAAAGACCGTCACAGACAACAAACAGAGCATCTGGCCCTTGACAACGACCTGAAAGAGAAATACATGCAGGAGGCCCGCAGCCTGGGGAAGAACCTTCGACAGCCCAAACTGTCTGATCTGTCTCCCGCCGTCATCGCCCAGACCAACTGGAAGTTTGTGGAGGGGCTGCTCAAGGAGTGTCGCATGAAGacaaAGCGCATGCTGGTGGAGAAGATGGGCCGGGAGGCGGTGGAGCTGGGCCACGGTGAGGCCAACATCACCGGACTGGAGGAGAACACTCTGATCGCCAGCCTGTGTGACCTGCTGGAGAGGATCTGGAGCCATGGGCTGCAGGTCAAACAGGGGAAGTCGGCCCTGTGGTCCCACCTGCTGCACTACCAGGCCAGAGAGGAGAAGCttgagcagcagcaggcagagtcgccagTGTCACAAGTTCCTGAGAGGAGGAAGTCTGAAGGTTTCTTAGCGATGCCATCTCTACGTGTGTCTCTCATACAGGATATGAGGCACATCCAGAGTATGTCCGAGATAAAGACAGATGTGGGACGAGCGAGGGCCTGGATCCGTCTGTCCCTCGAGAAGAAGCTGCTCTCTCAACACCTCAAACAGCTGCTGTCTCGACAAGCCTTAACCAAGAAGCTGTACAAGCGCTACGCCTTCCTGCGCTgcgaggaggagaaggagcagTTCCTCTTCCACCTGCTGTCTCTCAACGCCGTCGACTACTTCTGCTTCACCAGCGTCTTCACCACCATCATGATCCCGTATCGAGTCGTCATTATTCCCATCAAGAAGCTGAGCAACGCCATGACCACCTCCAAcccctgggtgtgtgtgtcaggagagCTGGGAGACTCGGGCATCATGCAGATCCCCAAGAATGTCCTGGAGATGACCTTTGATtgTCAGAACCTGGGGAAGCTGACCACTGTGCAGCTGGGTCATGATAACGCTGGCCTCCTGGCTAAATGGCTGGTGGACTGTGTGATGGTGCGCAATGAGATCACAGGACACACCTACAGGTTCCCATGTGGCCGGTGGCTCGGTAAGGGCGTGGACGACGGCAGCTTGGAGAGGGTCCTGATCGGTGAGCTGGTGGTGCCCAGCGGAGAGGAGGATTGCCGTACACCCCCGCTGCAGCGCTCGCCATCCCAGACCAGACGCATCAGCATCACGTCACTGTCTGGAAGAGGATACAAACCGACTTCAGCCCAAATCCAAGAGGCCATTGGGGAGTCTGTGAACAACATCATCAAACACTTCCACAAGCCAGAGAAAGAGAGAGGCAGCCTGACTGTCCTGCTGTGTGGAGAGAACAGTTTGGTGGCAGCTCTCGAACAGTTCTTCCATCATGGCTTCAAGTCCGCCCGGCTCTTCCAGaagactgtgtttgtgtgggacTTTGTGGAGAAGGCTGTTGCCTACATGGAGTCAGCGGACCAGATGGGAGACCTTCAGGAGACCGCGGAGCCCCTGGGGATGACCTGTCAATCACTCTGTCACTACGTCAACTCCATCAACTCCACCCCCAGGAACATCGGCAAGGACGGGAAGTTCCAGCTGCTGGTCTGCCTCGGAGCCAGAGACCGCCTGCTGCCCCAGTGGCTCCCCCTGCTGGTGGAGTGCCCGCTGATCTCGCGGATGTACGAGGACACGGCCCTGCTCCGAGACCGCTCCACTGTCAGCGCCCTCATCGCAGTCCTGGAGACGATCCATGACTTCCCCATCACACTGGAGGCCTCGCTGGTCAAAGGCATTGACCTTTAGCCCCCGGAGGGACCACTCTACATTCTCCTCTAAAACTTCCCCCACCCCTTCCACTTGAAGCCCATTGGCTCTGGGGTTGGACACGTGACCAGGGAAGGAGGAAGTGAGAGTCGAGTAATGAAAACTGAAGAGACGTTTGGTTACCAAAGGCACGCTTCGTGTGAGAAGGCGAGGCTTTGGTTCAGGATGCAGTATTATTACCCCCAAAGACCCTTTTTAATTCAATTACAACCAGTGCttaattgtgttttatttcatgaACTATGCTGTAAATCCCAATTACTTGACATTACAGTGTACACATTTCTAGAACATACTCTTCGTTTCAGGTTTATTGCATCATCAGGCAGCCATTGGTTTCACTACTGACTAACGTAAAGCTTGCTGTAAGCCAGCAtagtattttatatatttcttaGTAAGTTCATGAAAAGAcccaaaccaacaatgtgttagtctCTCCATACTTACTGATACTACATACTCTGGCTCTCAGCTCCAAGCCCATTTCCTACCAAAGATGTCCATCTTTAAAAACAGCTTGTCACTGTAGTTTTATCAAACATGACTCAAAGTAAAGGAAATGAATCCATATTTGGTGCTCTGGTGAGTATTCGTGGTAcaggtaatgaaggaacatgtcacccagggcaacagtgtggctcactggtgtgttttaatagtttttggacaacaacggagctctatggcacagaggaagaagatgtATCACGTACTTGTTAGTAGGATCAATCCATTGTTGGGTTGGGTTATTTCATGGggacaatataaaatatcaccAGACTTACACCAACGTGTAATGCTAATataatttaacaaaaacaataagAGCAAGCTAATGTTTCGTagtgaaatgaactgaaacagtGGCTGCTTGGAGGGAAGAAAATCCAACTAAGAAATGTTAAGTATGCTTGGAAAATTGCTGacagtaatatacagtacactgaTATCTGGGGTGAAATATTGCAATACCACTAGTGTGTTTCTTTTAAGATTTTAGtagcagcagctgcagatgttttcCTGTGTGCTAGCTGTGTAGCCTCGCCTGCTTTCGGTAGGTGCATCTAGATAGACTGGTAGATTCCCTGTCCTCGCCTGCCGTCCTCACGCTCTAGTTAGGATTAGCTTTAGCTAGCACGTCGACGGTGATGTGACCTCAGGAAGAGACTGTGAGCGATCAGTGACACACTGGAACGATGAGTTAAGATGAAGAGGGTGATGAAGTTCTGTTCTGCGTCTACATCCTTTCACACAGTGCAGTGTTATGGAGTCCCCATTTCTCCATGCCTCTCTGTCTTTAAATCTGCTGGACTCGTGTCGGCGTGGAACCTGTGGCTTCATAGACATTCCTActgaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312316 lncRNA upstream 24818 25376347 ~ 25377601 (+) True G230259
TU312312 lncRNA upstream 28995 25362899 ~ 25373424 (+) False LOC120553523
TU312317 lncRNA upstream 50245 25351877 ~ 25352174 (+) True G230260
TU312293 lncRNA upstream 210476 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 603678 24795953 ~ 24798741 (+) True G230192
TU312410 lncRNA downstream 52 25491783 ~ 25494355 (+) True G230327
TU312420 lncRNA downstream 3417 25495148 ~ 25495399 (+) True G230336
TU312421 lncRNA downstream 8116 25499847 ~ 25500209 (+) True G230337
TU312423 lncRNA downstream 11933 25503664 ~ 25504436 (+) True G230339
TU312504 lncRNA downstream 103861 25595592 ~ 25606850 (+) False G230401
XM_039792050.1 mRNA upstream 2212 25392432 ~ 25400207 (+) True LOC120553526
XM_039792038.1 mRNA upstream 28423 25362882 ~ 25373996 (+) True LOC120553523
XM_039792040.1 mRNA upstream 28423 25369256 ~ 25373996 (+) False LOC120553523
XM_039792039.1 mRNA upstream 29562 25362882 ~ 25372857 (+) False LOC120553523
XM_039791862.1 mRNA upstream 54866 25263996 ~ 25347553 (+) True ttll12
XM_039791084.1 mRNA downstream 55209 25546940 ~ 25553001 (+) True prl2
XM_039791989.1 mRNA downstream 76808 25568539 ~ 25574022 (+) True cdnf
XM_039791198.1 mRNA downstream 116775 25608506 ~ 25614445 (+) True tmbim4
XM_039791311.1 mRNA downstream 129712 25621443 ~ 25640090 (+) True lemd3
XM_039791312.1 mRNA downstream 129712 25621443 ~ 25640090 (+) False lemd3
TU312157 other upstream 624161 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1089481 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1514995 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1553795 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 546556 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 881005 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 881005 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1577346 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2111274 27603005 ~ 27603702 (+) True G230842

Expression Profile