RNA id: TCONS_00073017


Basic Information

Item Value
RNA id TCONS_00073017
length 778
lncRNA type retained_intron
GC content 0.49
exon number 3
gene id XLOC_037092
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21826724 ~ 21831588 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTCTCTTCCGTCCGCTGTGGGTAGAGGCGCTGTTCATTCACGAACCTCGGAAGTTCGCATTGCAACCTTCAAGTTCACTTCAATTTTGTTGAGTTCGTGGTTCCAGTTTAAAAGCATGGGGAAGCGTGTAGCTGTCGTGCTGGCGGGCTGCGGAGTGTTTGATGGAAGTGAAATCCATGAGGCGTCTGCGGTTCTGGTTCATCTGAGCCGTCAGCAAGCCACTGTCAAGATGTTTGCACCCAACACTGACCAAATGCACGTTGTGGATCATCTGAAAGGCTCTCCAACAGAGGAGAAGAGAAATGTGCTTGTGGAAAGTGCCAGACTGGCCCGGGGTGAAATTGAAGACCTCAGCCAGCTCAATGTGAAGGATCTGGATGCCATCATCTTCCCTGGTGGTTTTGGAGCAGCCAAGAATTTGTGCAGCTGGGCAGTGGATGGCAAAGACTGCTCAGTCAATGATCAGGTGAAAGCAGTGCTTCAGGCCTTTCATGCTGAGAAGAAGCCCATCGGCCTGTGCTGCATCTCACCAGTGCTGGCGGCCAAAGTTTTCCCTGGCTGTGAAGTGACCGTTGGTCATGTCACAGATGAGAGGTAACAATAAACACAGAGAAATCTCTTTAAtcgggtgttttcacacctccagtttgaaaaaagtaagaaaagtccAGCtgtgtttaggtgggagtgtccagcggcaaaagagggaagggtttgttTGAAAAGGGAAGTTTCATTACACGCAAAAAAGCTCATTTGCACACCGGCAACTTCT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-75 No description available

Ensembl:

ensembl_id ENSDART00000144447

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073011 lncRNA upstream 23774 21802075 ~ 21802960 (+) True XLOC_037090
TCONS_00075100 lncRNA upstream 60999 21762019 ~ 21765735 (+) True XLOC_037089
TCONS_00074895 lncRNA upstream 63765 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00075099 lncRNA upstream 70824 21719774 ~ 21755910 (+) True XLOC_037087
TCONS_00075097 lncRNA upstream 94493 21714337 ~ 21732241 (+) False XLOC_037087
TCONS_00073027 lncRNA downstream 163444 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00075101 lncRNA downstream 482989 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA downstream 483151 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA downstream 483185 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073038 lncRNA downstream 530218 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00073012 mRNA upstream 2087 21819082 ~ 21824647 (+) False XLOC_037091
TCONS_00073013 mRNA upstream 2087 21819136 ~ 21824647 (+) False XLOC_037091
TCONS_00073014 mRNA upstream 2544 21819742 ~ 21824190 (+) False XLOC_037091
TCONS_00073015 mRNA upstream 5578 21820101 ~ 21821156 (+) True XLOC_037091
TCONS_00073009 mRNA upstream 10128 21793565 ~ 21816606 (+) False XLOC_037090
TCONS_00073018 mRNA downstream 14171 21843915 ~ 21845783 (+) True XLOC_037093
TCONS_00073019 mRNA downstream 147639 21977383 ~ 21983659 (+) True XLOC_037094
TCONS_00073022 mRNA downstream 160351 21990095 ~ 21991120 (+) False XLOC_037096
TCONS_00073023 mRNA downstream 160351 21990095 ~ 21991216 (+) False XLOC_037096
TCONS_00073024 mRNA downstream 160392 21990136 ~ 21991200 (+) True XLOC_037096
TCONS_00073007 other upstream 114588 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 266949 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00072979 other upstream 600602 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 622012 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 967241 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00073020 other downstream 154365 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 160314 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 163384 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073045 other downstream 561822 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 747201 22576945 ~ 22577059 (+) True XLOC_037108

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09494831_09498396.mRNA True 676 mRNA 0.47 4 CI01000009 9494752 ~ 9498396 (-)