RNA id: TCONS_00073033


Basic Information

Item Value
RNA id TCONS_00073033
length 628
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_037102
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22017368 ~ 22018304 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCTGGTACAGTGAACTGAAGCACTGAGAAAAAAGCAAGCTACCACCATGGGCAAGGTCATCTTCTACGAGGACAGAAACTTCCAGGGCCGCAACTATGAGTGCATGAGCGACTGTTCTGATATTTCCTCATACCTGGGCCGCGTCGGGTCCATCAGAGTCGAAAGTGGTTGTTTCATTGTCTATGAGCGCAATGGCTTCATGGGCAACCAGTTCTTCCTGAGAAGGGGCGAGTACCATGACATTCAGCGTATGATGAGCATGGGCATGATGTTCGACACTATCAGATCCTGCCGCATGATTCCTTCATACAGGGGATCCTACAGAATGAGGATTTATGAAAGGGATAACTTCGGAGGTCAGATGTACGAGCTGATGGATGACTGTGAGAGCATCCAGGACCGTTACCGCATGTCCGACTGCCAGTCCTGTCATGTGATGGACGGTCACTGGCTCATGTTTGAGCAGCCCCACTATAGAGGCAGGATGATTTACTTCAGGCCTGGAGAGTACAGGAGCTTCAGAGATATGGGATTCAGCAACATGAGATTCATGAGCATGAGGCGTATCACTGACATGTGTTAAATTATTAGAATATAGAAgcaaataaagtattattttcagAAA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-898 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

Ensembl:

ensembl_id ENSDART00000023059

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073027 lncRNA upstream 23477 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00073017 lncRNA upstream 187624 21826734 ~ 21829744 (+) True XLOC_037092
TCONS_00073011 lncRNA upstream 214408 21802075 ~ 21802960 (+) True XLOC_037090
TCONS_00075100 lncRNA upstream 251633 21762019 ~ 21765735 (+) True XLOC_037089
TCONS_00074895 lncRNA upstream 254399 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00075101 lncRNA downstream 294429 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA downstream 294591 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA downstream 294625 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073038 lncRNA downstream 341658 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00074896 lncRNA downstream 624082 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073032 mRNA upstream 4549 22011912 ~ 22012819 (+) True XLOC_037101
TCONS_00073031 mRNA upstream 12535 22003942 ~ 22004833 (+) True XLOC_037100
TCONS_00073030 mRNA upstream 15590 22000812 ~ 22001778 (+) True XLOC_037099
TCONS_00073029 mRNA upstream 20219 21996461 ~ 21997149 (+) True XLOC_037098
TCONS_00073028 mRNA upstream 20253 21996315 ~ 21997115 (+) False XLOC_037098
TCONS_00073034 mRNA downstream 61818 22080122 ~ 22080854 (+) False XLOC_037103
TCONS_00073035 mRNA downstream 61934 22080238 ~ 22080989 (+) True XLOC_037103
TCONS_00073036 mRNA downstream 333139 22351443 ~ 22366179 (+) False XLOC_037105
TCONS_00073037 mRNA downstream 341615 22359919 ~ 22360742 (+) False XLOC_037106
TCONS_00073039 mRNA downstream 346693 22364997 ~ 22366295 (+) False XLOC_037105
TCONS_00073026 other upstream 23453 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 26156 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 31372 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073007 other upstream 305222 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 457583 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073045 other downstream 373262 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 558641 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073057 other downstream 639925 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073071 other downstream 988147 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 1027963 23046267 ~ 23046385 (+) True XLOC_037119

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09368857_09369508.mRNA True 554 mRNA 0.49 2 CI01000009 9368831 ~ 9369508 (-)