RNA id: TCONS_00073029


Basic Information

Item Value
RNA id TCONS_00073029
length 519
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_037098
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21996315 ~ 21997149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATTTTCTACGAAGACAAACATTTTGGGGGTCATCAGTATGAATGCATTGATGACTGTGCAGATATGCTTTGCTATCTTCACCGCTGTAATTCTATCAAGGTGGAGAGTGGATGCTTCATGATCTATGAACAACCCCATTACAAAGGCCATCAGTTCCTCGTCCGTAAAGGAGACTACCCAGAGTTTGAAAGCTGGTTGGGTAAAAATGACTCCGTCTGCTCCTGCCATGTTATTCCTATGATAGAGGGATCGTCCCATGAGGTCAAGCTCTTTGAGAGAATGGAGTATGGTGGTCAAATGATGGCTCTTGCGGACGACTGTCCCAATGTGATGGATATGTTCCAAATAAACCATGTGTACTCCTGCAAGGTGTCTGGGGGAAGCTGGCTCTTCTTTGAGCAATCCAACTATAAAGGCAGGATGTACCTCATACGGCCTGGAGATTACACCAGATTTACTGAATGGGGTGGCATAAATGCCCGTGTGGGTTCCATCAAACGAATAATGAATTACTAA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-426 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception.

Ensembl:

ensembl_id ENSDART00000132201

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073027 lncRNA upstream 2570 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00073017 lncRNA upstream 166717 21826734 ~ 21829744 (+) True XLOC_037092
TCONS_00073011 lncRNA upstream 193501 21802075 ~ 21802960 (+) True XLOC_037090
TCONS_00075100 lncRNA upstream 230726 21762019 ~ 21765735 (+) True XLOC_037089
TCONS_00074895 lncRNA upstream 233492 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00075101 lncRNA downstream 315584 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA downstream 315746 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA downstream 315780 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073038 lncRNA downstream 362813 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00074896 lncRNA downstream 645237 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073025 mRNA upstream 2404 21993092 ~ 21994057 (+) False XLOC_037097
TCONS_00073023 mRNA upstream 5245 21990095 ~ 21991216 (+) False XLOC_037096
TCONS_00073024 mRNA upstream 5261 21990136 ~ 21991200 (+) True XLOC_037096
TCONS_00073022 mRNA upstream 5341 21990095 ~ 21991120 (+) False XLOC_037096
TCONS_00073019 mRNA upstream 12802 21977383 ~ 21983659 (+) True XLOC_037094
TCONS_00073030 mRNA downstream 3663 22000812 ~ 22001778 (+) True XLOC_037099
TCONS_00073031 mRNA downstream 6793 22003942 ~ 22004833 (+) True XLOC_037100
TCONS_00073032 mRNA downstream 14763 22011912 ~ 22012819 (+) True XLOC_037101
TCONS_00073033 mRNA downstream 20219 22017368 ~ 22018304 (+) True XLOC_037102
TCONS_00073034 mRNA downstream 82973 22080122 ~ 22080854 (+) False XLOC_037103
TCONS_00073026 other upstream 2546 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 5249 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 10465 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073007 other upstream 284315 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 436676 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073045 other downstream 394417 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 579796 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073057 other downstream 661080 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073071 other downstream 1009302 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 1049118 23046267 ~ 23046385 (+) True XLOC_037119

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09375453_09376121.mRNA True 791 mRNA 0.39 2 CI01000009 9375181 ~ 9376121 (-)