RNA id: TCONS_00073057


Basic Information

Item Value
RNA id TCONS_00073057
length 470
RNA type processed_transcript
GC content 0.40
exon number 6
gene id XLOC_037111
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22656976 ~ 22672826 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGATAGAAAAGAATCTGTGAAAAAAAACTCGAAGATGATCTAGAAAATTCACGTATTATTTTTTACACTCTGTTGCTGAATTTCTTGCACATCTCTCAAGGCTTTCACAATGAAACCCTGTATACCGATGTTAGGAGGAGGTGTATGTTGATGAGGTCACTGTTTGAACTTGTCTTCGCCAATAATTATCTGGAGCTCACAAACCCAAAGTTGCTTGGATGGTTCTTATACTTAACAGCAGAGGACAGGACCTTAATACAAAACGAAGGAGGGCTTCTgtcttttttaaagaaacatccaGAACTTGGAGTAACCAGACAGTATGTTTATGTAAAAGcaaaaCCCAAAGGAAACTACGTTCCCCCTCCTACAACTATGGCATCAAACGATTCCAGGTACCCAACATTTTATGGTTCATCTGGGTGTCAAAACTGTGGGACTAGTTGTCCATTTGGTACCAAGAAGTGC

Function

GO:

id name namespace
GO:0045171 intercellular bridge cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5562 Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44).

Ensembl:

ensembl_id ENSDART00000144480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074896 lncRNA upstream 15544 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073038 lncRNA upstream 297487 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00075101 lncRNA upstream 344612 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA upstream 344612 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA upstream 344612 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073062 lncRNA downstream 32905 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00075104 lncRNA downstream 326213 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 341148 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 341148 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA downstream 341208 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00073049 mRNA upstream 8932 22631672 ~ 22649297 (+) False XLOC_037109
TCONS_00073050 mRNA upstream 9208 22631787 ~ 22649021 (+) False XLOC_037109
TCONS_00073053 mRNA upstream 10763 22634073 ~ 22647466 (+) True XLOC_037109
TCONS_00073051 mRNA upstream 21140 22631853 ~ 22637089 (+) False XLOC_037109
TCONS_00073052 mRNA upstream 21482 22632126 ~ 22636747 (+) False XLOC_037109
TCONS_00073058 mRNA downstream 14775 22677503 ~ 22679833 (+) False XLOC_037112
TCONS_00073059 mRNA downstream 14775 22677503 ~ 22748014 (+) False XLOC_037112
TCONS_00073060 mRNA downstream 14815 22677543 ~ 22748014 (+) False XLOC_037112
TCONS_00073061 mRNA downstream 14817 22677545 ~ 22748015 (+) False XLOC_037112
TCONS_00073063 mRNA downstream 101507 22764235 ~ 22779813 (+) True XLOC_037113
TCONS_00073048 other upstream 81170 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 210651 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073026 other upstream 664314 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 667017 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 672233 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073071 other downstream 343723 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 383539 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073080 other downstream 701514 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 884917 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 1034196 23696924 ~ 23700456 (+) True XLOC_037131

Expression Profile

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