RNA id: TCONS_00073074



Basic Information


Item Value
RNA id TCONS_00073074
length 1464
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_037120
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23049500 ~ 23056240 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTTTACTCGCCGCCGTTGTTACGTAATCAGAAGGTTAAACAAGACTAGCTTGAAGTAAGCTAACAGCTAACATACACACTACAAAATTCAGGTGAACCGTAAACAAGAGAAGCCCAACAGGATGGCCAGTGTGCTCTGCAGCAGAGCTCGACTGGTGACGTACCTACCAGGGCTTCATGTTCTAGTTCATCGTGTTGTTGGAGCAAGAAGTTTCTCTGGGGCGTCAGGATCAGATGAGCCACACCTGAACACCTCAACTCCTGACATTGCACCAAGGACTGTGTGGCCGGATGAGAGCATGGGCCCATTTGGACCTCAGGATAAACGTTTCCAGTTGCCGGGTAATGTGGGTTTTGACTGTCATTTGGAGAGTCCAGTGGAGCAGAGAACCACTTCGGTCCATAGTGTGATGCCAGATGTGCTCACTGCTCAGTCCAACAACCAGAGACATGACTTCATCCTGGCCCAGTTCATCAATGAGCTTCATgaGGATGATAAAACGTCTACAGCACAGAACATGGATAAAGCAGAGCAGTTTTTTGATCATTCCAGTGTGGAGTGTGCCATTCAGTCTTGTCCTGAATTGTTAAAGAGAGATTTTGAGTCCATGTTCCCTGAGGCTCCCTCAACTGGCATGATGGTGGTCACTGTGACACAGAGGACGCAGAACGACATGACTGCCTGGACTGAGCAAGTGGACCAGGAGAGAGAAGAACTGCTGGCTAAATTTATTGAAGGTGCAAAGGAGATTTGCCACGCTCTCCGAAATGAAGGATTCTGGGCCGATTTTATAGACCCATCATCTGGACTTGCATACTTCGGCTCATACACAAACAACACGCTCTTTGAAACCGATGACCGGTATCGACATTTAGGCTTTCAGATTGAGGACCTGGGGTGTTGTAAAGTGATTCGGCATGTGATGTGGGGGACACACGCTTTTGTAGGTACTCTTTTCACCTCGGCTCCACCCAACAGCCAGATCATGAAGAAGCTACAAGGGGACCTGAGTTAAAGATGCTGGCTCATCATGGGAACACTATGAAATATCAAACCAAACCTCACCTTTGAGCTGACTAGCACAATCAATAACACTTACAGCTCACAAATACACCTAATGATGCTGTCTAATGAACATTGCAGGTAAtgagtatttatttttgtaaaataaaaagcacTTGGGGGACTTTATTGTAGGTGTGTGTGCTAAAGAGGGAGGATCATTGTGTTATTTGTCCAGCAGCTCTCTCTGTTGCCTTTCCTGTTCCACAGACCTCAAAAGAATTGAAATGTGTGACATATTGCTGTATATAAAAATCCAAATTTGGTGAATGTGAATTGGTTGTTGATAGTGGTTGTTTGTCCATTAACACAAGTGAAATAGAGCTGTGATTGAGTTTAATTTAGTGTTGTAAGCTTTCTTCATTGCTTCATGATGggcacaataaataattaaagagaGTA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000012478

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00075105 lncRNA upstream 42522 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA upstream 42834 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00073069 lncRNA upstream 45050 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075104 lncRNA upstream 51440 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073062 lncRNA upstream 351646 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00074897 lncRNA downstream 69916 23126156 ~ 23128231 (+) False XLOC_037122
TCONS_00074898 lncRNA downstream 70303 23126543 ~ 23127995 (+) True XLOC_037122
TCONS_00074899 lncRNA downstream 265594 23321834 ~ 23333979 (+) True XLOC_037126
TCONS_00075106 lncRNA downstream 307608 23363848 ~ 23419530 (+) False XLOC_037127
TCONS_00075107 lncRNA downstream 307614 23363854 ~ 23456345 (+) False XLOC_037127
TCONS_00073072 mRNA upstream 26212 23009608 ~ 23023288 (+) True XLOC_037118
TCONS_00073068 mRNA upstream 41559 23003208 ~ 23007941 (+) False XLOC_037117
TCONS_00073067 mRNA upstream 109990 22929675 ~ 22939510 (+) True XLOC_037115
TCONS_00073065 mRNA upstream 247328 22781019 ~ 22802172 (+) False XLOC_037114
TCONS_00073066 mRNA upstream 247328 22782027 ~ 22802172 (+) True XLOC_037114
TCONS_00073075 mRNA downstream 68012 23124252 ~ 23162384 (+) True XLOC_037121
TCONS_00073076 mRNA downstream 168521 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073077 mRNA downstream 176661 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073079 mRNA downstream 199170 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA downstream 199170 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073073 other upstream 3115 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 42522 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 386772 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 472441 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 601922 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073080 other downstream 308002 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 491405 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 640684 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073100 other downstream 829403 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 1034667 24090907 ~ 24102291 (+) False XLOC_037141

Expression Profile


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Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08842201_08845751.mRNA True 969 mRNA 0.49 6 CI01000009 8842111 ~ 8845751 (-)