RNA id: TCONS_00073067


Basic Information

Item Value
RNA id TCONS_00073067
length 2359
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_037115
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22929675 ~ 22939510 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTAACCAACCTGCCAGAAGAGAAACGATATTTACGTCATCACTGCGCGTCAAGCTGAAGAAGGACAGATGTGGATGTGCACGCTGATGACTCCAGTTATTATACCTGCAGGCTGTTTGCATCGAGAGCACAATTAATAAGCAGTCTCGGTTTACAGTGTTTGCATCATCCGTAGATTGGACATTGGGATTAGCTCGACACGGCAAACAGCACAAGCTAACAGCGTTTGAAGATGTCTGTAACGGAGATGTTTAGTTATATTCAGGGCTTTCTGAGTGCCGATCAAGATATTCGAGAGGACATAAGAAAGGTTGTCCAAGGTCTGGAGCAAACAGCCAGAGAGATCCTTACTGTCCTTCAAAGTGTCCATCAGCCAACTGGCTTCAAAGACATTCCAAGCAAGTGTCTGAAGGCCAGAGAGCTGTTCTGCACTGTCAGGAATCACACCGGAGAGCTGAAAACCAAGTTCCCTGTGGAGCAGTACTATCGGTATCATGAACTCTGGAGATTTGTTCTTCAGCGACTCGCCTTCCTTGCAGCGTTTGTGGTTTACCTAGAAAGCGAGGCATTGGTCACACGCGAGGAAGTCGCAAAAATACTTGCCATTGAAGTTGACAGAGAAAAAGGGTTTCATTTGGATGTGGAAGACTATCTCGCTGGAGTTCTTATTCTGGCAAGTGAGCTGTCCAGGCTGGCAGTGAACAGTGTGACCGCAGGGGATTATGGGCGTCCGCTTAGGATCTCAAACTTCATCAATGAACTGGACTCTGGCTTTCGCTTGCTCAACCTGAAAAACGACCCCCTCCGCAAACGCTACGACGGCCTCAAGTACGACGTGAAAAAGATCGAGGAGGTGGTGTACGATCTCTCCATCCGAGGCCTCGCCAAGGAGCAGGAGGCAGGAGAAGAGAAGTAGAGTTGTTGTGGGAATGCAGGAGGCCCTGGCTGCGATTCGCCACATCTGAAGAAGAGTGCTTGAACCTGATGGCGGGCAGGTGGACAGTTGAAGAAGGGGAGGGAACGGAGGTCCTCAGACGGTGTCTTTTAAACCACCTGCTTACCTTGACAGAGAACAGGTTTCAATGGGAAGATGTTTTCTTTCTCACTTCTGTTGAGAGATGCTTTTGTACAGGTGCGTTCTGTTTGCCTGTTCTGTTTGATTGGATGTTTTTATACTCTTATTGATATTTTTGTCTCAGCCACGTGTATTTCAAACCATTTTATAGTCAAGCAACATGAAGAAATTTGGGAAATGTTGGGGGAAACAGAGGTTCTGtgcttgttttgttcatttcagtCTAGAAGGACATCAAGATGTTTGATGTTGACTTGCACAAGCATTACATTGgacattttttctgtttattaattaaattggGTTTtcgaaacacttttttttgtcactttttgataactttttttttaaatttacgtCAAAATTACATTTGTGGTTTGAAGTGAACAAGAAACATGCCAAAATGTTAAGCTTTATACAGTAAAAATATCTGCACTCTGTAAGTCGTAAATTTTCCTTGACTGGTGGTTCGCTGTTTGTCTCATATGCACAATTCCATGTATTTCGCTGTTGAATGGACggtttatacaaaataaaagttctgtTGTAAATTTTTCATCTTCAGGTTATTCTGAAATTTTTATTGTCCACTTTTGTTTTTGATCCCATTGGCTTAATTTGTTCCCCCCTACAAAACAGTGGACATCTATTTTAAAATGATGTCTGTCTTTAGTGATTTACTGAGGGAAGCTTTGGAACAACACTAGGATGAGAAAATTATGACCGAACGTTCATTCCTTACTGTACATTACTGATCAGTTGTGTATCACTTTGACTTCACTATTTGCTTCTTTTTGTTCTGCTCTGATGTTGTTCTGGACGTTGCATGCTGAACTTGTTAAAGTATTTCATTATGAGAAAGAGCTTTggaaaaaataacacaaacaatATAAGCAAAAGTTTCAAAGAGCAAACTGACCGTGCATTTGTTTTGGTATGTAAAGCTTTATGGAAACTTTTCCATTCCTCccttctttatttgtgttctgtCAGTGCATTGCCTTTTTATTGCAGATCTTGTCTCTTTTGTATGTGCATGTTTCATCTGATCTTCAGTGATGTTGGGGggcttttacttttattttcttaGTATTTGTAAGCAATAATGCTTTGTTTCTCCCCAAAGAAAGACTTCTGTCTGACAGTATTTGCATTTGAAATGCCTGTTCATGTGGTGATTCAACATTTGACTTTGCTTTTCAATAGGAAATCATGTTTTTCTTGTTCAGTAGTGTTATATAATAAAGATTATCGTTGCAAACGATGTTCTCAGAAAACACAGA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6039 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA metabolic process. Predicted to be active in cytoplasm and nucleus. Is expressed in forebrain and midbrain. Orthologous to human TSN (translin).

Ensembl:

ensembl_id ENSDART00000061299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073062 lncRNA upstream 231821 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00074896 lncRNA upstream 286990 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073038 lncRNA upstream 568933 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00075102 lncRNA upstream 616058 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075104 lncRNA downstream 49431 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 64366 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 64366 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA downstream 64426 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00074897 lncRNA downstream 186646 23126156 ~ 23128231 (+) False XLOC_037122
TCONS_00073065 mRNA upstream 127503 22781019 ~ 22802172 (+) False XLOC_037114
TCONS_00073066 mRNA upstream 127503 22782027 ~ 22802172 (+) True XLOC_037114
TCONS_00073064 mRNA upstream 127771 22780901 ~ 22801904 (+) False XLOC_037114
TCONS_00073063 mRNA upstream 149862 22764235 ~ 22779813 (+) True XLOC_037113
TCONS_00073061 mRNA upstream 181660 22677545 ~ 22748015 (+) False XLOC_037112
TCONS_00073068 mRNA downstream 63698 23003208 ~ 23007941 (+) False XLOC_037117
TCONS_00073072 mRNA downstream 70098 23009608 ~ 23023288 (+) True XLOC_037118
TCONS_00073074 mRNA downstream 109990 23049500 ~ 23056240 (+) True XLOC_037120
TCONS_00073075 mRNA downstream 184742 23124252 ~ 23162384 (+) True XLOC_037121
TCONS_00073076 mRNA downstream 285251 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073057 other upstream 266947 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 352616 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 482097 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073026 other upstream 935760 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 938463 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073071 other downstream 66941 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 106757 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073080 other downstream 424732 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 608135 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 757414 23696924 ~ 23700456 (+) True XLOC_037131

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_08930289_08935481.mRNA True 1485 mRNA 0.44 7 CI01000009 8929920 ~ 8935790 (-)
bowfin (Amia calva) AMCG00000851 True 4305 mRNA 0.41 6 CM030137.1 5440030 ~ 5446252 (-)