RNA id: TCONS_00073065


Basic Information

Item Value
RNA id TCONS_00073065
length 7574
RNA type mRNA
GC content 0.46
exon number 36
gene id XLOC_037114
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22780901 ~ 22802172 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGTAGTCGAGAACATTTAGCAGCACTTTACGCTATAAACTCCTCCGATTCCTCTGATATAGTTTGAGTTTTGATGAAATCGCCTTCAGAGCCTGTCAGCGAGTCCTCAGTCGCGAGGTTGTGAGGATGATGGCGGCAGTGCCTTTATCCAGTACCAGCCTCCTTCCTCTTCTGGAGTGTTTGGAAGATGAATCAGCTGGGCTTTCAGCGCAGACGGATGCCTACATCACCATTGCAAACCGACTTAATGGAGAAGAAGGACGCCAGTTTCTGCCTGTGGTTGTTAAGCATTTTGCACGTCTTAGTAAAGTGCTTTTGGTTCACATCTCCAGTGAGAATGAGGAGCTGTGTCAGGCTGCACTGCAGGCTTTGGGATTCTGTGTCTTCCACTCACACATAGTTTCAGTCATACCAGCAAATATTTCAGAGAATATATTGTCTACGCTCTGCAATGTTGTGGTAAAGTCCAAAGAGAAGTTTACGTGCACTCGGGCATTGTGGGTCATTTCAAAACAGAATTTCCCTCCAGAGGTGGCATCCAAAATGGCCCCAGAGATTCTCAAGAGCCTAGAAGCGATGCAGACCAGAGAGGTGCAGTCCATCCTCATTGACCACGAGTCACTCAATGTCATCATAAGGTTACTGGAGCAGGCCCCTGTTCCGATGGCTGTTGGTGCTGTTTGCTGGGCTAAACTTGTTATTCCTCTGGTGGTTCATTCGGCCAATAAAGTGCGTCTGCGAGCGGCAGCTGCCCTGGAGCTCGGCATGcctcttcttctggagaaacagCAGGAAGTGGCAGCCATTGTTGAGCCAATGATGTCTTCTGTGCTCATCCCTGAAATGCAGAAGCTCTTTGCGTCTAAGAACGAGACAAACATGTTGAAACTCTGGCCTTTGTTTGTAAGACTTCTGGGCAAGtTACTCCACAAAGGCGGTGCTTTCATTAACTCCTTGCTGTATCTAGAGGAGCTGGGTTTCCGCAACTCTTCTCCTAATATTAAGAAGATTGCTTTCATAGCTTGGAAGAGCCTCATTGACAATTTTGCCCTTAATCCAGataTCCTGTGCAGTAGCAAGCGTCTGAAGCTCCTCATGCAGCCGCTCAGCTCCATCCAAGTCAGGACTGAAGCTCTTCTGCTTACCAAGCTGGAGGTCTGGTGGTATCTTGCTGTCAAGCTCGGACCCAACCTGTCTGCTAACTTTGAACAGGTTGGCGTGCCTCTATTGCACAGCACACTTCCTTCTGATTCTCCACTTCAGAGCCCGACTACACCTGCTCGAACCTCTAACCCAAGCAACGGCACACCTAACACCCCTAAGTCAGGCATTCCCTCCTGCAGCACGCCGAGCACGACTCCTCGCATGAATCTGAACAGCAGCATGCAGGCGCCTCAGTCCTATCGTTCCATTCAGCTCCTGGGACTAGAGATGCTCCTGCACTGGCTTGTGGGTCCAGAGGTCACAGTCACAGCTGCTCGAGAAAACCTTCAGCTCAGCCTGGagcCCCTGACGCACCCGCTTTTTACCAGCCCTTCCACCTTCAGCAGACATGCTTCTACCCTCATATCTGCCAGCAAAGAAGGCATCATTACTGTAGGGAAGCATGCTCCAGAAGCACTTCTTAATCTTATTTGGAGCAACCTGATCATTTCTGTCAGTGCAGCAATTGAAGCTGGAAATAAAAAGGAGCGACAGGGTTCAGAGGTCCTCACACTTTTCCTGCAGGCATTGCAGTCCATTTTGTCATCAGACGCTCTGCCTCCTGAACGTGCACTGCTTCTGTTGGAAGCCACTGTAAAGGGAATACCTCAGAAGGTGCTTGGTTCTGCAGCTTATCAAGTGGCAAACATGGACGTGTTAAACGGTACTCCTGCACTTTTCCTAATACTGCTGTTCTATAAAAGTAACCAGCTCTCATCATTTCTTGAAGACGAAAGATTTTTTTCAAGCTTGGAGACCCTTGTAAGCTGTGGGTTTTGTGGACCCACATCGCCCTTGGCATTTGGAGAGGCGGTTTTAGGAGCAGTTAATGGGAGTGTGGAGACTGTTAAAAACAAGAAGCAGCTCTGGAGAATGTGGAGTATGGTTGTAAGTCCTCTGACGGACACAATTACTCAGACCAATGAAGTCAACCAAGGCGATGCTCTGGAGCATAACTTCAGTGCCATTTACAGTGCGTTGATGTTCCCCGTCATCCACCTGCTGCCTTATTCAGCCTTACCACAGACCACTCAGAAGGCCATGATCAGCACATGGTCCAGGCTTTACAAGGCTTTTGCCCGTTGCTCAGCTTTGGTTGCCACAGCAGAGGAGAATACATGCTGTGAAGAGTTGTGTGTCAAGATCTCTGCCTCTCTTGACCGTGAAGCTCTAAAAAGTCTGTCTATGCTAGATGCAATAGCACACATCTTGCTCATCATCGTTGAGAGTATGGACTTTTCTCCATATACCCCTCAGTTCCAGCAGAAGATGAAATCTCCTCGTACACCCATGAGTTGGGTACGCAAGAGAAGCAGAGCCCTCGGGAATCTCTCAACCTTCCACACTCTTCTGATACAGACTCTAGAGGCTTTTCTCACTGCAGACCATTCAGAAGAATCTGCAGAGCCTTTAAATGGAATTGGCTCTGCCTTGGTGTCAATCTTGACCTCTCTTTTCACTAATATTACCCTTCCCTCATTCTTACAAGAGGTGCTCTCCAGCCTCACCAAACCACTTGCACGTCTTTATGAGCAGTTCTCCTGTTGTGATGACCCATCAAAGCTCAGTCCAGAACTAGGGCACAAGctGGAGAAACTGGCCGCAGACTTGCTAGGCTGCCTTCAGACACATTTGACTCTCCATGATGATGAATTCCTCACTGTGTTGTCGCCCTTGCTTTGTGTACTTTTTTTGCACAAGAGCAAACAGGTTTGCTCTGTGGTCACTCAATTCTGGAATGCCACTTTTGGAAATGCGCTCACCTTGAGTTACCCAGAACCTCTGAAgtGTGTTTTAAATCAGGCTAAGCAGAAGACTCCACTGATTTTACCTGGTTTTGAAGTTGTTGATGTACCAGATGATTACAGTGGAACATATATGAGTGAGAGTTCTCAGCTGGAGCCTCAGATTAGCGGGGTAAAAGTGACCTCTGTGGGAAAGAGGGACTCTCTTTTGGCAAGAGCAGAAGAGCTAACAGGAAAAAGTTCTGTAACCACATCAAAACCAGTGTCTGTAAAGCTGGACTTTGGCTCCCCCAAGCCCTTAAGACGAGAAGCTCTTGAGGAGGAAGCATCtgaagattttgtttttattccacCTGAGATGAAAGAGAGAGTCCTGACTGAGCATCAGAAGGAAGTGAAAAGGACTAAACGGGTTGACATTCCTGCCCTGTACAATAATCTTGATGCCTCCATGGACACCACAGTCTTTTCACAGTATACTCAGAGTCAGGAGGAGTCaatGGACACATTGCCTAAAGGTGAGAAGGATCATCCTGTGGAAGCGGCTAGTGTTCAACTGAGGGAGGTTGCCTCAAATGAAGTACCAACCACAGATGTTAAAGTCCAAAAAGTCACCAGTTCTGATATAGAAACTCCAGATAAAGCTACGCCGAATAAAGATCAAACTTTGGAGATGGATCAATCACCATCTACTGGTGTCTCAGTTGATGTGAGTGGGCTTGAGAAAAGCGCATTGGAGGGGACAAGTCCTAATATTTCAAGTTCATCTGATGTGGTATCTGGCACACCTCCTAAACCTAACAGCAGGCGTCAGTCATTTATAACCTTAGAAAAATATGCTGAAGGGAAATCGACAAGTCCTGCAAGTCCTGCATTTACAGGTACGCTCACCCGGAGATCAAGAAGACTGGAGGCTTCACAGGCATCAACATCAAATCAAAATGATTCTCAACCTCAGATTAAAAAAGTGGATTCTCAGGAATCTCAAAAGATGAGCAGCATTGACATGTCCATTCAAAATGAGCATGCTAGCATGGAAGTAAAAGATGAGAAGTCAGTGGGAGCTAATCCATGTGAAGGTACAGATGAGGAAGATGTTGTTCCAGATACCCAAACCCAAGTATCTGGTGACACATTGGGTATTAAAAGCAGTCCTGTGTCTAAAGCCCATGCGGAGGCACAGGGGACTCCTGAAAAAAATTCACAGAGTCCTAATGATTCTCTAGCTAGTCAAGAACCAAGAAGGTCTGGCAGAAGGCGAAGTAAACCTGTTCGTCCAGGGCAAGATGCAGaggaaataaaaagtaaatctCAAGAACAAGCCAGTCAACCTGCAGACTCTGCGATAATAAACTCACAAAAGCCCCTTCTTGCTTCACCTAGTAGTACTTTGACtggaagaaggaaaaaaaaggtTGAGACCAATAAAATGGAAGACCAGCTGAACAATGAAGAAATGAAAGGAGATCTCAGCCAAAGCGATTCACAGATTTCCGCTGCTGACCCTCCACAGACAGTAGGTGTGCATGCCAATAAAGACTTAAGCCAGACTGAGTTATCTCCGAAGAGTTCTCCTGTAACCCAGTCAAATAGCCAAAGCAAAGAGAGACTGCCAGCTCTCTGCGAGTCTGAGAGTATGTCGTTAGGTAGACAGGAGACAAAAACACAACTTGAAGAATCCACAGAAAAGGAGACAAATAATGACTCTCAAAACGCTTCATCTGCAGCGAGACCGAAGCATATACAGTCTACCACGTCTGACTCCGAGTCGGATAGCCAGCAAATTGTCCGTAAACGAAGATCGAGGAGATCTGAAACTAAGTTACTGGAGATATCTGGTGTGCCGATCAAAGAAGACTTGAATCAGACAGACTCCCAAACTCCAACAGGAGTGAAGGGAAGAGCTATGAGGAGGAGAACCGTAGAAGGTGCAGAGTCTAGTAAAGATTCCACATCAGCGGTAAATACAGAGGAGTTAAGTGCAGGCAAGGAGTCATCACAAGAGCTTGGTAGATACAGAACTCGACGTTCTAGGGGTTTGTTGTCTCCTGAGAGTATGGAGTCTGAAAACTCTGATAGCCGAGAAGATGGGGCAAGGCCTAAAAAGAGGCTGCGAAAACCACCATCAACAGAGGTGTTACCTGTTGCTTCAGAACCCAAAGTTATTGAGATGGTACCAGAAAAGGACGATGTTCAGTCAGAGGTTTTAATGGAGACGTCAAAGGATGAGGCAGATCCTGAAAATATCTCGAATACTTCAGTCAGTGAAACCAAAGAACTTGAGCAAAAGAATAAAGAGGAAGTCCCTGCCCCTTGTGATGCACCACATGAACAGATTATCACGGAAAAAGCAGCATCAAACAACAAAATTGACACTGACTTAACTGATACAGACGAAAAAGAAACCGTCAAGGCAGAGGGTGAAGAAGCTAATGAATCTTCGCAAACTGGATCAGAAGATTTTAAAAAGACAGATGTTTTGCATAAATGCCCACATACAAAGGGACGGGGCCGTGCACGTAGACGATCTAAAAACTGCAACTGCTTTTCCAACAACCGTGATGTGTTTTCACAGGACAGTGACTTCCAAGAATCACAAGATCTAAAAAATGAACAGGTTCCACTTGCTGCCAACATCTTGAACTCTCAACCTGATCAGTCAAGCCCATCAACTGCATCAGAAGAAAACAAAAGCTCAGCAATTGAAGAAGTCCCTGTTGCGGATGTTCCATCACTTTCAGCCTTATCAGCTGATCTCCCATCTGAGGTTTCACCTTCTGAAAGTCCCATTACAAAACTTGGGGTAATTGTTTCTCAGCTACCAGAAGTGGAGAAAGAAGCACAGCCTGGATCATCCAAACCAATGAAGGATTCGAGCAAGGAGCTTGTAGAAGAAGTGAATCGATTAAGTTCTGGATCCACAGGTGGTCAAAAGCACAAAGGAGAAAATAGATTAGAAAACACTTCAGTAAGCCAAGAACCTGTCCAGAGTTCAACACCTCAAGACACGTCTCCAAGTCAAGGTCGTCCAGTGGACGATGCACCAATATGCCAGGAGCAGTTAGAGTCTTCTCATGTCCAGCAGGAAGATGCAGTTAACCCAGCAGTgatggaaagagaagaccttgcTGTGTCAGAGCAGAGACAAGAGAAGGCTGTGTTGTCTGAAGAGTTAGATGGAAAAGGTTTGCTTGACAAGGAAACTACTCTTGTTGAAAAGGAAGAAGAGATGCAGGTTAATAACCAGGATCTTCCTGTGGATGTCCAAGAAGAGTTACCTGTAGTGTCCCAGAGTAGCACATCTGAAGCCTGCTTGGATTCTCCACCCAAGCCAAAACTGTTAAGCGCACTCAGTGGTGAACTAGAGCCTGGCCAGAGTCCAACTAGAAGTCGGTCTCGAGTCTGGTCACCATCTGCTTCTCCGTCTACCAGTATTCTGAAGAAGGGTCAGAAGAGAGCATGTGAAGAGGAGACTCCATCCCCCATTCCCAAGTCACGTCGAGTGTCTTTTGCAACTCCAATTTACCAGCAAGAACTGGCTGATGACATTGATCGTCGTAGTCCGGTTATTCGCACAAGTTCACCTAGGTCAAAAGTCTTGAGTGGACAGTCAAAGTATATCACTACACCAACAAAAGGTGGCTATACAAGTCTGAGTCCACGTAACCTCCGTAGCCCTGGATCCAAAAGCTCTAAAAAATGTCTgATTTCAGAGATGAGCCAGGAGCCACGTCCTATTCCTAAAGATTGTGTTTATCCAGCACTTGTTGGCTGCTCTACTCCAGTAGAAGCTGTTCTGCCACAGATTTCCTCCAACATGTGGCCGCGTGGCTTCGGCCAGCTTGTTCGAGCCAGGAACATTAAGACAGTAGGAGATCTGAGTGCTCTTACCCCTAATGAAATCAAGTCTCTTCCTATTCGCTCACCTAAGCTGTCCAATGTGAGGAAAGCACTTAAAACATATCATGAACAACAGAGAAAAGGACGTTCGGATGACCTGAAGAGTTTTGACGAAATGGAGAAAATGACGTCTGAACCTGAAGAGATGGAGCTTCCTCAAAACCAAGATGAGGAGCAAACATCAGGACCAGAGGCTCAAACAGCAGAATCAGAGACTCAAGAAGACAAAGCCTCAGAAGTGGAAGTAAATTCAGAAGTGGTGACTGAAGAGAACCAATCTCATGATTTGCTCTCAGATATTGTAGCTCTTGGTGAACGCTTTACGCCTGAGGAACTCAGTCAGCATTCAGCCAGTCAGTTGGGTCTGATGCATGAACATCTGAGTGGAATGATGAGGAGCATTGTGACCAATCTGCAGTCCCGCTTGCTCAGTAATCTGGACGATAGCTTGCCATGAAGACAAGAGACTGTTTTCCTGACAAGAATTACCTTTTAACTTGAAGATTAACTGTGGACTGCTCATTCCTCAAGTTTTAGCTTGAATTTTAGGATAGGTTAATTTCTAATTATGGTCTCTGAGAATAGACTTGAATGGCCAAAAGCCATTTCCATTACTACGTAAGTGTCTGTATTTTATGGAGTGATTTTTAAGGTTGTAAAATTGTGCTGAGATGCCAaggaagcatttttttgtttttttaaataaagttatagTATTAATACAA

Function

GO:

id name namespace
GO:0000723 telomere maintenance biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-3406 Predicted to be involved in telomere maintenance. Predicted to be located in chromosome, telomeric region. Predicted to be active in nucleus. Orthologous to human RIF1 (replication timing regulatory factor 1).

Ensembl:

ensembl_id ENSDART00000143972

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073062 lncRNA upstream 83165 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00074896 lncRNA upstream 138334 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073038 lncRNA upstream 420277 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00075102 lncRNA upstream 467402 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075104 lncRNA downstream 186769 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 201704 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 201704 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA downstream 201764 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00074897 lncRNA downstream 323984 23126156 ~ 23128231 (+) False XLOC_037122
TCONS_00073063 mRNA upstream 1206 22764235 ~ 22779813 (+) True XLOC_037113
TCONS_00073061 mRNA upstream 33004 22677545 ~ 22748015 (+) False XLOC_037112
TCONS_00073059 mRNA upstream 33005 22677503 ~ 22748014 (+) False XLOC_037112
TCONS_00073060 mRNA upstream 33005 22677543 ~ 22748014 (+) False XLOC_037112
TCONS_00073058 mRNA upstream 101186 22677503 ~ 22679833 (+) False XLOC_037112
TCONS_00073067 mRNA downstream 127503 22929675 ~ 22939510 (+) True XLOC_037115
TCONS_00073068 mRNA downstream 201036 23003208 ~ 23007941 (+) False XLOC_037117
TCONS_00073072 mRNA downstream 207436 23009608 ~ 23023288 (+) True XLOC_037118
TCONS_00073074 mRNA downstream 247328 23049500 ~ 23056240 (+) True XLOC_037120
TCONS_00073075 mRNA downstream 322080 23124252 ~ 23162384 (+) True XLOC_037121
TCONS_00073057 other upstream 118291 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 203960 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 333441 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073026 other upstream 787104 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 789807 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073071 other downstream 204279 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 244095 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073080 other downstream 562070 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 745473 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 894752 23696924 ~ 23700456 (+) True XLOC_037131

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_09014504_09031053.mRNA True 7815 mRNA 0.46 31 CI01000009 9014227 ~ 9031053 (-)