RNA id: TCONS_00074898


Basic Information

Item Value
RNA id TCONS_00074898
length 765
lncRNA type intronic
GC content 0.35
exon number 2
gene id XLOC_037122
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23126156 ~ 23128231 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgggggttcagtttgttagcgctaacttagctaaagttagctcacctaagttatagcagcacattaaggatggatattaaatgcagaaatgtatgcaacagttaagtagtttgtgtttaacgtaagagaaagtacaacttaaagtttgtgttttagagatttattccataagttttttttaatgctgcatagtgaataaattacagatttacaatttattttaacttaaattacatttactgatgtttacagaaccatttaaactgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcCGAGGTGCATGCAGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacaagtatccatcaaaactgtatacatttgagatatatcagagactctttgtggggctggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075105 lncRNA upstream 119565 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA upstream 119877 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00073069 lncRNA upstream 122093 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075104 lncRNA upstream 128483 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073062 lncRNA upstream 428689 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00074899 lncRNA downstream 193839 23321834 ~ 23333979 (+) True XLOC_037126
TCONS_00075106 lncRNA downstream 235853 23363848 ~ 23419530 (+) False XLOC_037127
TCONS_00075107 lncRNA downstream 235859 23363854 ~ 23456345 (+) False XLOC_037127
TCONS_00073081 lncRNA downstream 236587 23364582 ~ 23367209 (+) False XLOC_037128
TCONS_00073082 lncRNA downstream 236616 23364611 ~ 23367004 (+) False XLOC_037128
TCONS_00073074 mRNA upstream 70303 23049500 ~ 23056240 (+) True XLOC_037120
TCONS_00073072 mRNA upstream 103255 23009608 ~ 23023288 (+) True XLOC_037118
TCONS_00073068 mRNA upstream 118602 23003208 ~ 23007941 (+) False XLOC_037117
TCONS_00073067 mRNA upstream 187033 22929675 ~ 22939510 (+) True XLOC_037115
TCONS_00073066 mRNA upstream 324371 22782027 ~ 22802172 (+) True XLOC_037114
TCONS_00073076 mRNA downstream 96766 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073077 mRNA downstream 104906 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073079 mRNA downstream 127415 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA downstream 127415 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073085 mRNA downstream 383918 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073073 other upstream 80158 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 119565 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 463815 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 549484 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 678965 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073080 other downstream 236247 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 419650 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 568929 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073100 other downstream 757648 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 962912 24090907 ~ 24102291 (+) False XLOC_037141

Expression Profile

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