RNA id: TCONS_00073909


Basic Information

Item Value
RNA id TCONS_00073909
length 5961
RNA type mRNA
GC content 0.50
exon number 50
gene id XLOC_037641
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 8634229 ~ 8670158 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGAGGTTGGGCTCCCTGGTTTGATGGGCCTTGTTGGGTTTCCTGGAATGCAAGGTCATGAGGGCCCTCCAGGGTCAATGGGGCCAAAGggTGACAGAGGGGAGATAGGAGCACCAGGAATTAAAGGAAGCAGAGGCCtacctggtcaagctggtttccCAGGACGTCCAGGTATTCCAGGTCTTCCTGGTCTAGAAGGAGCACCTGGACCTCAAGGAATCCCAGGCTGCAATGGAACAAAGGGGGAGCGAGGATTTGATGGGATCCCAGGTATTACGGGATTGCTGGGACCACCGGTATTAAGGGAGGAAAGGTATGGAACTTGTTCTAAAGGTGATCCAGGTGGTGTTATTGGATTACCCATCCCTCTAAAAGGAGACAGAGGCTTGCCAGGACAACACGGTTTCCcaGGTCAAAAAGGTAATGCTGGACAACAAGGGCCTGTTGGTCCACCTGGACCTTATGGACCTCCGGGAAGACCAGGTGATCCTGGACAAAAAGGAGAGCCGGGTGACAAGCTGACCTTTATTGGTGAGAAAGGGGAAAAGGTGAGTTCTAGATTTTCTTACAGTATCGTGGGACAAAGAGGTTTAACCGGCCCCCCAGGTCCTCCAGGAAGGTCAGAGGAATACGAAGGCCCTGCCACAACACTTTATCTTCCTGGACCACCGGGTGAGACAGGCTCTACTGGAGACAAAGGAGACAAACATGGAATAAAAGGTGAACCAGGACCACCAGGGCCAATAGGGAAACCAGGGAAAGATGGACAGAGTGGAGAAAAGGGGGAAATCGGCTTCCCTGGTAATCCGGGACTTGATGGCTTCAAGGGTGACAAAGGAGAAAGAGGGCCACCAGGATATGGTGCTGGTTCTCCTGGCCCTCCTGGTCCTCCAGGCCTCCCTGGAGCAGAAGGAGAAACAGGTTTTCAAGGAGAGCCAGGAGCTCCTGGTCCCCCAGGCAGATATATCGAGGGTCCTCCTGGACCACCTGGCTTCCCTGGAGAGATTGGCAAGAAAGGAGAAAAAGGAGCCGATGGACGGTCTTTTCCAGGTCCCAAAGGAACTGATGGGCAACCTGGCCCACCCGGACCGCCAGGACCTATTAGCCCTCCGGGACCTCCAGGGTTGCAAGGAGAGGTGGGACAGAAAGGTGATCAAGGTGAAACATGCACAGAGTGCAATGCTTTTGGTCCCCCTGGTTTGCCTGGTCCTCAAGGGCCAAAGGGTCTGCAAGgtttTCCTGGACCAGCAGGTATTAAAGGCGAGAAGGGTTTGCCAGGGCCCAGTGGGCCAGCTGGAAATGCTGGTTTTAATGGTGCTCCAGGTTTGATGGGTAAACCTGGTGCTCAAGGTGAACCTGGTGATATATTTGTGGCTCCTGGGCTGAAGGGAGATAAGGGCTTACCTGGTACTACTGGAGACAGAGGATTCCCGGGTGTTGATGGGCTCCCAGGAAAAGATGGACGACCAGGATATCCTGGAACCAAGGGAGAGCCTGGTGATCGTGGCCCAGATGGAGATTTTGGAGTTCCTGGCCCTCCAGGCGAAAGAGGTCCCCCAGGTGAACCAGGTATAGGTCGGCCAGGTCAACCTGGAGATAAGGGCTCTGCAGGATTCCCTGGTGCACCAGGAAGGCCAGGACTACAAGGAGCTAAAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCAGGGCCTCGTGGAGAGAGTGGTAGACCTGGTCTTCAAGGTGATAGAGGATTTCCAGGTGAACGTGGGGTTCCAGGATTCCCTGGAGATAAAGGTGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAGGGTACTCTGGTATTCCAGGACCAAGTGGAATCCCAGGAGAGTCTGGCGAACCAGGTCAGGATGGCTTACCTGGTCGCGCAGGAACACCTGGTCAAAAAGGTGAACCTGGCAGGGGTCTTCCTGGTCCTAAGGGTACTACAGGTCTACCAGGAGTGCCAGGATTTCCAGGGGAAAAGGGTAATACTGGAATGCCAGGGGTTCCTGGAACAGAAGGACGTACTGGGCCACCTGGACCTCAAGGACTTAAAGGTAACCCTGGACCACCTGGAGTCCATGGTGCACTAGGGCCACCAGGTCCTCCAGGACTGGGAGAACCTGGAGCTCCTGGACCAATGGGGCCACCTGGAGGCCCTGGACCTATTGGCCAGTCTGGAATAAAGGGTGACAAGGGTTATCAAGGACTACCTggtttggacatgcctggccCTCCAGGAGACAGAGGTAGCCCTGGTGTCCCAGGTCTACCAGGATCAAAGGGTTTGCCTGGGCAACCAGGAGTTCCTGGAAAAGATGGCTTTCCTGGCGAACGTGgTCCAAAAGGAGAAATTGGAATCATGGGAATGGCAGGACCACCAGGATTTCAAGGTTTAGTTGGAAATCCTGGAGATCCTGGGCAAAAGGGTGACCCAGGTATGCCTGGCATCAGAGGAGACTTTGGTGATTTAGGCACCAAGGGTGAGAGAGGAGAGCCGGGTCTACAGGGGCCACCTGGAAATATGAGTGATGTGGACATGGAACACATGAAAGGGGATAAAGGAGACATAGGAGACAGAGGTGATCCTGGTCCTACTGGAGAAAAGGGGTTTCCTGGAACATCTGGTGACCCTGGTATGCCAGGAAAAGATGGAATGCCAGGGTCACCTGGACAGCCAGGTGATAAAGGAGACCCTGGAATCATTGGAAAACCAGGAAGCATTGGAGAACCTGGAGACACAGGCGCTAGAGGAGACATGGGATACCCAGgttCAATGGGTCCAAAGGGTGCTAAAGGTGTTGGTGGTTCACCGGGTCACCCTGGTTTTAAGGGGACTGATGGCTCCAAAGGAGATAAAGGAGATCCTGGTGAACCAGGAATAGGAATCCCTGGTCCCCCTGGCACAAAGGGAAATATAGGCTCCCCTGGATTCCCTGGTGAGCCTGGAGAGAAGGGACAGAAGGGTACAATGGGTATGACAGGAACTCCTGGAACTCAAGGACATAAAGGAGACCAAGGATCGATTGGCAGTCCAGGGAAGCCTGGTGAGAAAGGTGTTGGTGGGTTGCCAGGGTCCCCAGGAGAACCTGGGACTCCAGGACGTCCAGGTGAGCCTGGTCTACAGGGTCCTCCAGGTCCCCATGGGGAAAAAGGTCAATCAGGGCAAGATGGCATTCCTGGATTCACTGGAGAGAGAGGGGAGCCTGGTGTACCAGGGAGAGGTTTGCCCGGATCTCGTGGAGAACCTGGCGGCAAAGGTGACAAAGGCAACCCTGGTCTTCCTGGCATTCCCGGGAGTCCAGGTATACCTGGAACCAAAGGTGATAAAGGTCTGTCAGGATTGCCAGGGGATCAAGGTCGACCTGGGGAGAGAGGACTTCCAGGACAAGCCATGGAGGGGCCTAAAGGGGACAGAGGAGACCAGGGACAGCCAGGAGAAAGAGGTGCAACTGGTGAACAAGGTCCACCTGGAATTCCAGGAAGTGCTGGATCAAAAGGAGAAAAGGGAGATGTGGGCTTCCAAGGCGCACCAGGCTCTCGGGGTTATAAAGGAGACAAAGGCTtcattggcgtttctGGTGAGCCTGGGTTGCCTGGTTATAATGGACCAAAGGGTGAGATGGGACCCCAGGGTGTTCCTGGTTTCCCTGGTACAAAGGGTGAACAAGGAGTGATTGGTTCTAAGGGTGAAGGAGGTGACAGAGGATTCCCAGGTCTTAAAGGTAGTGAAGGTCCCCCTGGACCCCCTGGACCACACACATATGTAAAGGGAGATCCAGGTCCTCCAGGACCACAGGGTCCCCAAGGTCTAGTTGGAATTCAAGGCTTCCCTGGGGCAAAAGGACAACAGGGTGTGATGGGACTCCAGGGTTTAAAAGGAAGCGATGGGACACCTGGCTATAATGGACATCCTGGGGCCAAAGGAGAGCCTGGACAAACTGGACCCCCCGGGCCTAGAGGGTACCCCGGACCCCCAGGGCCTGATGGTATTCCAGGTCATATCGGCCCTCCAGGCCCTTCCTCAATGGACCACGGCTTCCTTGTAACTCGCCACAGTCAGACTATTGATGTACCACATTGTCCACAGGGAACGACGCCAATCTATGATGGATATTCCCTGCTTTATGTCCAGGGCAATGAAAGGTCACATGGGCAAGATCTAGGTACAGCTGGTAGTTGCCTAAGGAAGTTCAGCCCAATGCCGTTCCTCTTCTGTAACATCAACAATGTTTGCAACTTTGCATCTCGTAATGACTATTCCTACTGGCTGACCACTCCAGAGCCCATGCCTATGAGCATGGCCCCCGTCACCGGCGAGAGCATCAAACCCTTCATCAGCAGATGTGCTGTGTGTGAGGCTCCTGCTATGGTTATAGCTGTGCACAGTCAGACCATACAAATTCCAAACTGTCCCGATGGCTGGGCTTCACTCTGGATTGGATACTCTTTCGTTATGCATACGAGCGCTGGTGCTGAGGGCTCCGGTCAGGCTTTGGCTTCTCCTGGCTCTTGTCTTGAAGAGTTCCGCTCGGCTCCCTTCATCGAGTGTCATGGTCGCGGCACCTGCAACTACTACGCCAATTCTTACAGCTTCTGGTTAGCCACCATAGAAGACACAGATATGTTTACGAAACCAGTCCCTGCAACATTAAAGGCCGGAAGTCTAAGAACTCACATCAGCAGGTGTCAAGTGTGCATGAAGAGGGTATAATCCTGCCTCAGCGCTCTTTCTCATCcagttttatgaacaaaacaactAATGTACTGTTTGGTGCTACTTCTATGAAAAGCCATAGAAAAACTTCAAGAACACATTTGCGTCTCTACATTTATAAGCAATGGAACCTCAAAGATTTCCCGGCACATTTGCTTCattcaaaaaaaaagtgttaactaAGGCAGTTCCATCGTGCCTAATGAATGACGCCTGTTTACACTTGCACTGAGTATATGGATAAGTAAGCAGGTAACCATCTTCCAAAACATTATGATTTGTACACTTTTCCGTCCAACACTCTTTACGtattttatttcatctttaaTTATCATGCCACTCAACGATATCAGATGCAGATATCTTTTTCTCtctaaaaaaaagtataatcaaGCAACACTAACGTTATGGAATTGGaggattgtttgttttttcctacttcACTGCCACCTTGTCAGCACCGTCTTTTGTACGATGTAGGAAAGGCAAAGATCAAGCTTATTGTTGTAAATATAGTGCTCTATCTAGTTATCTAACATTCTGTCGCCATAATCTCTTCAGGTAAATACAAATGATTTTGTTATACTTAGTTATTTATGAAAACTTATGAGAGTTTAAGCACCAAGGGGCCTTTTCTTTTCTACTTTGATTTCTCTCTGTGTAACCACTGCAGAAGACCATGTCATGGCACATAAACTGTAATATTCAGCGCTGTTTCTTTTGTGCAGCGGCGTATGGCTTTCAGACTGAAACCTGCCATGTTTGAATCCTTGTTTCATTTTTGCTTGCAACTGTGGCGGTTCACATTTCTTTCATCGTAGAAATGTTTCATTAAGCTTGTGTAATTccatattttcagtctcatttccATAGCCAAAATGCAGCAATAACAATAGTGCTTAGGAATatttagcattgttttacacTGCAAAATACGCTTTTTATTAGTGGGAttacggatcacaaatctcacggttagGATCACTTTACAGTTTTTGAGTCACAACAGTGTACAAGAGTGTACAACAAATAACCCCCTCAAAAACTGGTTATTGTAGTTATTGACTACAAACTAACAATGGTTTGGCTACACTaagcatacagttgaaaccagaagtttacatacactgtataaaaaggcacatgaccatttaaaaaaaaagtcagatgttaaagtaactaaactttttcttttttaggtaGGTT

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-114 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

Ensembl:

ensembl_id ENSDART00000077296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075294 lncRNA downstream 348021 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00075293 lncRNA downstream 470234 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075292 lncRNA downstream 691632 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075291 lncRNA downstream 1128698 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00073887 lncRNA downstream 1274745 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00073916 lncRNA upstream 338965 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073915 lncRNA upstream 338965 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00075295 lncRNA upstream 339031 9009189 ~ 9024195 (-) False XLOC_037644
TCONS_00075296 lncRNA upstream 341160 9011318 ~ 9024102 (-) True XLOC_037644
TCONS_00075297 lncRNA upstream 356225 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00073908 mRNA downstream 180169 8429239 ~ 8454060 (-) True XLOC_037640
TCONS_00073907 mRNA downstream 320201 8290649 ~ 8314028 (-) True XLOC_037639
TCONS_00073905 mRNA downstream 336885 8288268 ~ 8297344 (-) False XLOC_037639
TCONS_00073906 mRNA downstream 337506 8289863 ~ 8296723 (-) False XLOC_037639
TCONS_00073904 mRNA downstream 950227 7678137 ~ 7684002 (-) True XLOC_037635
TCONS_00073911 mRNA upstream 217370 8887528 ~ 8895243 (-) False XLOC_037642
TCONS_00073912 mRNA upstream 217831 8887989 ~ 8895130 (-) True XLOC_037642
TCONS_00073913 mRNA upstream 302922 8973080 ~ 8979154 (-) False XLOC_037643
TCONS_00073914 mRNA upstream 304118 8974276 ~ 8979468 (-) True XLOC_037643
TCONS_00073917 mRNA upstream 510462 9180620 ~ 9225980 (-) False XLOC_037646
TCONS_00073901 other downstream 978928 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1095206 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 1916428 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 2224958 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4187125 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 1073401 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 1100177 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 2175760 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2878614 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2881446 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_03626104_03650769.mRNA True 4651 mRNA 0.54 43 CI01000037 3626010 ~ 3650769 (-)