RNA id: TCONS_00073929


Basic Information

Item Value
RNA id TCONS_00073929
length 4420
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_037654
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9577743 ~ 9671244 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaggaaatttcTGAATTACCGTGGGGATTCTGCTCACCGTTTCCTTTCGGAACCGCACGTTTGGCTCGTTTCTTGAACTGCCCGTGTGTTAAACTGGATTTCTTCTTTCGCCATCTGTGTGCATGGAGTTAAGTGGGTCGGAGCGGCCGAGGATATCAGTGTTGAAATTGGGCAATTGGAAAATTCTCATTCGTATCGCTGGTTAGAGCAAGGAAGCCGCCATGGCTGGTGCTGCTGATTCGTCGAGTCTCCACCTCAGTATATGAAAAATACTGCATGGCGATGAAAAACCGCCCCGGTTGTTTATAGCGGTTTGAGGCTGTATTAGATACGGACTGTGTGCTTTGTGTAAATCTGTTTCAGACACACAGAGAGTCGAGGATCCGTGGGTTTTGTTCGAGGGAAGCTGGGAAAAGGCCAATTTCATGAGCACCTTAATAAATAACCGAATTTACCCGAGGTTTCATCTCTAAAGACGATACTGATAAGTCACCGACAATAAAACAACCCCGAGGAAAATGATCTGAACTCGAGACTGTTTGAGAGCTCACCGAAGAAAAGGACAGCCGAGTTTTCCTTCGCCCGTTTCCCCTCATTACTTAATTCGGAAATAAACTGCTACCCGTAGGTCGAAACGGATTCGTTCAAGACAAACAGACGTATTTTACTCTGAGAGAAGCGTGGGATTTCGGATTGAAAAATGTCCGGTCGGCCCAGAACCACCTCCTTCGCAGAAAGCTGCAAGCCAGTGCCGCAGCCGTCGGCATTCGGCAGCATGAAAGTCAGCAGAGATAAAGATGGCAGTAAAGTGACCACAGTGGTGGCGACTCCTGGACAGGGACCTGACCGGCCGCAGGAGGTCAGCTACACTGACACCAAGGTCATCGGTAACGGCTCTTTTGGCGTGGTCTATCAGGCCAAACTCTGTGACTCAGGAGAACTGGTGGCCATTAAGAAGGTTCTTCAGGACAAGCGATTTAAGAACCGTGAGCTTCAGATCATGAGGAAATTAGACCACTGCAACATTGTTCGTCTGCGTTACTTCTTCTACTCCAGTGGAGATAAGAAAGATGAGGTGTATCTGAATTTGGTTCTGGATTATGTTCCTGAAACCGTGTACAGAGTGGCAAGACACTACAGCCGCGCTAAACAGACTCTTCCCATGGTTTATGTGAAGTTGTACATGTACCAGCTCTTCAGGAGTCTGGCCTACATCCATTCCTTTGGGATCTGCCATCGGGACATAAAACCGCAAAATCTCTTGCTGGACCCAGACACAGCCGTGCTCAAACTCTGTGACTTTGGCAGcgCTAAGCAGTTAGTACGTGGAGAGCCCAATGTGTCCTACATCTGCTCACGGTACTACAGAGCTCCCGAACTCATCTTTGGAGCCACCGACTACACCTCCAGCATAGATGTGTGGTCTGCTGGCTGTGTGCTGGCTGAACTGCTGCTCGGACAGCCCATTTTCCCAGGTGACAGCGGCGTGGATCAGCTGGTGGAGATCATCAAGGTGTTGGGAACTCCCACACGAGAGCAGATTCGGGAAATGAACCCAAACTACACCGAGTTCAAATTCCCGCAGATTAAGGCCCATCCATGGACTAAGGTGTTTCGGCCACGCACTCCCCCTGAAGCCATTGCCTTGTGCTCCCGGCTGCTGGAATACACACCGACCGCTCGACTGACTCCTCTCGAGGCCTGCGCTCATTCCTTCTTCGATGAACTGCGGGAACCAAATGTCAAACTTCCAAATGGACGCGAGAAGCCTTCCTTATTCAACTTCACAACTCAAGagctGTCCAGTAACCCTACCCTGGCCTCCATCTTAATCCCCGCTCATGCACGTAACCAGGCAGGAGCTTCAACTCCCACCAACCCCTCTGCCACTTCAGATGCCAACAGTGGAGATCGCAGCCAGACGACAACTGCAGCCTCCGCCTCCGCCTCTAACACCTCAACCTGAGAGCCCTAGCCAATCAGACCTGACCCTGCCTCTGAGGCCACGCCCACCCTACTGCTCACCAGCCTATCGGCAGGATTTGAGTCATGCGACCATCACTCTAATTCAGACTGCAGGAGCCAACTTTCATTTACGCCTTTTTCAAAACAAGTTCAAAATAACGTGAGGCAAAAGCCTAAGGTGTAATCCACCAGAGCCACAGAAACCAAGAGAGCAGAGAGGAGGGTTAAACCATTAATCCTGGTCTATGACCAGCCcaaagttttgttttgatttttgtttgtcattCTCAGAGGACAATCTTGTAATGTAAGCAATCCGGTAGCCAGATCCATCCACTTCCGTTTGCATTCAGGCTCCCGTTTTTGTTCCTCACCTGGACTGTCTCTAGCTACACACTCTGTTCTGGGCCTCTGACAACCAAACGCATGGCTTGAATTTGGTCGGGAGCCCCtcatgtatacatatataaatattaagcgtgtatatatatgtatatgtactgGGTGAAAATGAAACTAGAGGAAATATCGTATCTAATCGTATCCAACAAATGTAAAAAGCGCATGTTCCAGCCACAAAGCCATCAGAGGAATGCTCTGATCACGCAGTTTTAAGTCAGCCCaatatcttttattttgttttataaaaaaaaaaaaggacggGCTATTGGGGAAGGGCAGACCTTTAGATCGACAGGTGAGACGTACTGTCTCCATCTCTGTGTTCTTGTatgatatatacatacacagtttatatattactttgcattatgtaaaataaatatatatatataaatatatatatagttatatatagatCTATATCTAGCATCATCGATTCAGAATCCATCAGTGCGTCAGCACAGAATGATACAGTATGTTTTCTCTGCTGGAGCTTTTCTAGTAAACACTGTTTGGCTTTTTTTGCTAAAACTAAAGTCCTGACATCCTCCTGTTATTCATCGTCACGTGTCGTAAAGTTCAGATCCATTGATCACAGCAAAACATGACGAAAAAGACTTCACAGAGACGGcgtttgtgttgttttaaccacTACTTTTGTTTCCTCTCAGTATATTTAATGCAAAATGTACGTTTTTCTTTCCCGAAATGTCTTAATACGCAAAGTATAGCAGTGCAAGAAAACGACAGACATGTATATACAGCACAGCACAGTTGCTCCTCACCAAATTCGggctttttaattgttttattttgtatgatttgcaagtgtgtgtgtgtgtgtgagtgaatgtgtacAAGCGTTTGTTCTGGCTGTGTACATAAATATATGCTGACCTGAGAACTGTTAATGAGCAAAAACAAAGACGAGGGATTAAACGAAAAACGGAtcaaagaagaaaacaaaaagagaTATAtgtaaaaacatcaaataaacagaTCAGTTTGTTGGATACTGTAGACAAGGAGCTTTCTCCAGCCATATAGTTCAATCTTCTCTGTACAGTAGGTGCCAGCTATATTATTGTAATTATGAACTAGTAATGTATAGTGTATCTATAGTTTGGAGTGCCTTTGCCACCATACACTTCCTGTCCTTAGACCACACCCACTCAAGATAAACCACGCCCCTCCCTCCTCATGCAGGTGCTGTTGATTGGTCAAATCTGTATGACTGACAGCTGATGCCATTTTctgtccatgttttttttttgatttgtgaTTCAACTGTTTgcacaaagatgttttgtgtgcgaatgtgtgtgtgtgtgtgtgtgtgtggaggaagTGGAGATGTCATGTTCCTGTGGAGCCGCTCACAATGCATGTTTTTACACTTGTTCCACTACCAAAGTGAAGCAACTTCTGAGCGTGTTGTGACGTAACTATGATATCCCAGGGGCAATAATGAtttctttgtgtgtttttttttttttttttgggctggaTGAGCAGCTGACAGTACGCAGTAGAGATGTCACGTAGCACCCGCTGGACCCTCGTCCCCCGAACCCTCAATGTAAAGCTTGCTTGTAACATACGCGTTCATAGATGTGTTGCTTTCCACGAATGGTGTGACCACTTTCCCGTGACTAAAGTTAGAGTAAAACTGTAAAGACacaaggggtaaaaaaaaaacgattaccaaaaataaaaagacaaaaaacaaatgttttacggACTGTGGGCTAAATACAGACTATCGCATTACATACACTTATTGGGGGGAAAAAAGTTGTCTtggtttaaaatgaaattaaaaaaatggaaaaaaatacaacCTGTATAACATTAATATTACTTGAATGCCTCTGTTTGTgactgaaatttttattttattttaaatatattctttttttctgtgaagGTATGCTAAATGTCTCCTCTCCTTGTAAATATGTCCGTTTTGGTCCTTGGTGTGACTTGGATTCAGAGACTAGTTACCTGGTACTGTAATTTGCATTAAATAAAGAGTAGGATAGCTTGGAAATGA

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0003146 heart jogging biological_process
GO:0001525 angiogenesis biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0007165 signal transduction biological_process
GO:0030424 axon cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0098978 glutamatergic synapse cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050321 tau-protein kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008013 beta-catenin binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990714-4 Predicted to enable beta-catenin binding activity; protein serine/threonine kinase activity; and tau-protein kinase activity. Acts upstream of or within angiogenesis; heart jogging; and heart looping. Predicted to be located in plasma membrane. Predicted to be part of beta-catenin destruction complex. Predicted to be active in several cellular components, including axon; cytosol; and glutamatergic synapse. Is expressed in ovary and testis. Human ortholog(s) of this gene implicated in Alzheimer's disease; amyotrophic lateral sclerosis; bipolar disorder; and schizophrenia. Orthologous to human GSK3B (glycogen synthase kinase 3 beta).

Ensembl:

ensembl_id ENSDART00000018228

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 206877 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 288673 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 288683 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 288704 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 527228 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 697136 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1883832 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1885962 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1900068 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1900068 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073928 mRNA downstream 158039 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073927 mRNA downstream 162743 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073925 mRNA downstream 229685 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073921 mRNA downstream 295224 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073920 mRNA downstream 334966 9230446 ~ 9242777 (-) True XLOC_037647
TCONS_00073930 mRNA upstream 4682 9675926 ~ 9705512 (-) False XLOC_037655
TCONS_00073931 mRNA upstream 8254 9679498 ~ 9689367 (-) False XLOC_037655
TCONS_00073932 mRNA upstream 8254 9679498 ~ 9696978 (-) True XLOC_037655
TCONS_00073933 mRNA upstream 47981 9719225 ~ 9732212 (-) True XLOC_037656
TCONS_00073934 mRNA upstream 64249 9735493 ~ 9842149 (-) False XLOC_037657
TCONS_00073901 other downstream 1922442 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2038720 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2859942 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 3168472 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 5130639 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 72315 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 99091 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1174674 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1877528 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1880360 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_04313204_04343186.mRNA True 1873 mRNA 0.48 11 CI01000037 4312626 ~ 4343186 (-)
bowfin (Amia calva) AMCG00014728 True 864 mRNA 0.55 7 CM030128.1 28905901 ~ 28916634 (+)