RNA id: TCONS_00073932


Basic Information

Item Value
RNA id TCONS_00073932
length 2442
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_037655
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9675926 ~ 9705512 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gatgtgtgtgtgtgagttgagCTAGAGCTCAGGCCAGTGATGGAGGCAGGACTGAACTGCAGCTCTCACTGTGAATCTGGCGTCTGCTTCATCAACGCTGGAGTGAACAGCCAGCAGGCCTGGGACGTCCTGCAGAGACTCTGTGCACTCACAgcgAGCAGTGTGGATGTCCAGAGTCGGTCTCTGTCTCCTGCTCTTCGTGCTGTCGTGTGGACGCTGCTGTCTTGTGGGATTTTACTGGCTCTCTTCTTCCTCATTTTCACTCtgcgctttaaaaacaacagGATAGTGAAGATGTCCAGTCCCAATCTGAATGTGCTGACCCTCTGCGGCAGCGTCCTCACATACAGCAGCGGTTTCTTATTCGCCATAGAGGAGAAATCACTGCTGTCAGGAGCAGGAGCAAGAGCTGTATTGCAGGCACGGATGTGGACACTATGTATTGGCAGCTCTCTGGTGTTTGGCCCTATTCTTGGGAAAACCTGGCGGCTCTACAGAGTCTTCACTCAGCGTGTGCCTGACAAAAGAGTGATTATTAGGGACATCCAGTTGATGGGTTTGGTTGCTCTGCTGGTCTTAGTGGACATTGTTGTTTTAACAGCATGGGGTTTGATGGATCCTGCCAAGTGCTCTCGGTCTGTCAGTGCAATGGTGAAGGTTATAGACCTGGATTCATCCTACTCTCTGTCCCAGCTAGATTCATGTTCTTCTCTCTACTCACACCTGTGGATAATCCTCATCTCTGTACTTAAGGGCAGCCTCCTCCTGTATGGCACGTATCTTGCCGGCCTGACGAGCAATGTGAGCTTACCCCCCGTAAACCAGTCTAAGACCATCATGGGTGCTGTCTGTCTGGTCACCATGTCAAGCGCCGTGGCTGTACCCATCTCCCTTTACCTCTACTCTTGGCCTAATGTAGTCTACAGCGTAATATCTGGAGCGATCTTCATCTGCACAATGGCCATCAACTGTCTTCTGTTTGTCCCTCAGcTGACCCAGTGGAGACATTTTGAAGAGGAGACGAACTCTCATCCCAGTCAAATGGCCAAATACTTCAGTAGTCCCAGCAAAACCACAAACTCCATGTATAGCGAGGATGAGATCTACTATCTGCTTGGAGAGAACGACTCAATGAAAAGACTTATCAATGAGAAAAATGCAGTTATTGATAGCCTACAGGAACAAGTGAACAATGCCAAGGATAAGCTGCTCAAACTGATGACTGCTAGCCAGCTCTTGGATGAGAGAGAAATGGACTCGTCCAACACTAACCTCAACTCCACCTCCACCCAAACCACAGTGGTATCTCCCGATTCTCCAACACTTGTTCTAAAACAATACTCAGAAGTCGCTCCCACCAGAGTTCTCTCTCCACCTCCCTATGTACCTCCTCCACCAATTCCCATCCACACTACCTCAAATGCAACATCCCCTGAAGGTCCAGGAGCTACAGATGAGTCTTCACCACACCTGAGGACACAAGGTAACTCTTTCCTTGAAGTTGAAAGCCTAAAAGGAAACACAGAAGACAATATCAGATACTCCGGTCTTGGAAAAGAAATCTCTGAGAAACCACAAGATGTGCCTTTGGATCAGGAAAAATTAACTGAGGATTTTCCTCCTCCAGCTTCTACTCAGTTTAATTTACCTCAGGTTGAGTCTCCAGTGCCTTCAGCCTCTGTTGAGCTCCCTGCCATTTCCCCAGCAGGTAGACTGGGCTTTGTGACCAATGAGCAGCTGGTGGAGATCTTGCAGGATCTGAGTATAGATGCTGTAAGCAGCTCTGTCAAATCACCCGACAGGGCGAGGAGCCCATCTATCAATCCAGATGAACTAAGCATGACTCTTTCTCCTCAATCCCCTCTACAGTTCTTCTTCCCACCCATCTCCCCTTATGTCATGCGGAAACGCAGGCCTCCATTTTACTCTTCAAAAGGTGGACCTCCACCTTACTACTTTCCAGGCTCGGTTCCTCCAGGTCGAAGGAGGGGACTTCCAGACCTTGAAAAGTTCAGGGATGATGACCCTATAACAAGTTCCACTGGTAACCCTCAAAGACATGACTTGTTGCGTGAGGAAAGGAGGAGTAAAAGGGCAGAGAAAGCACAGACTCAGAGCAACTCAGGACAGGACAGTTGGCAATGTTCTTCTCACAAATGTTCGATTACTCCTTTCATGGGACATGTTCCTCAGCCAGCCTCCGCTGGACTGATAGAGGAGGTTAAACACTCTAAGGAGCCATATGACTATTCAGACTCAGACTCCAGCAGCTCGGAGGACTACTGTTACTACCAGCGGTCCTACTGTAGAGCATGTCATCACCCCTATGACTCTACAGACAGTCTCACCTCAGGGACATCAGACAGTGAGGACGAGGATTTCTACCGCTTATCACATCCTGTCGTGAACTTTAAAGTCGATGTTAAACCAACCTTTGTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0038039 G protein-coupled receptor heterodimeric complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-060201-2 Predicted to enable G protein-coupled GABA receptor activity. Predicted to be involved in gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of G protein-coupled receptor heterodimeric complex. Orthologous to human GPR156 (G protein-coupled receptor 156).

Ensembl:

ensembl_id ENSDART00000175212

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 308632 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 390428 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 390438 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 390459 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 628983 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 671402 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1858098 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1860228 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1874334 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1874334 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073929 mRNA downstream 8254 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073928 mRNA downstream 259794 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073927 mRNA downstream 264498 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073925 mRNA downstream 331440 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073921 mRNA downstream 396979 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073933 mRNA upstream 22247 9719225 ~ 9732212 (-) True XLOC_037656
TCONS_00073934 mRNA upstream 38515 9735493 ~ 9842149 (-) False XLOC_037657
TCONS_00073937 mRNA upstream 256085 9953063 ~ 9960940 (-) True XLOC_037658
TCONS_00073938 mRNA upstream 273009 9969987 ~ 9977900 (-) False XLOC_037659
TCONS_00073939 mRNA upstream 273009 9969987 ~ 9982718 (-) False XLOC_037659
TCONS_00073901 other downstream 2024197 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2140475 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2961697 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 3270227 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 5232394 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 46581 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 73357 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1148940 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1851794 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1854626 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_04382857_04392318.mRNA True 3890 mRNA 0.44 10 CI01000037 4382194 ~ 4393088 (-)