RNA id: TCONS_00073936


Basic Information

Item Value
RNA id TCONS_00073936
length 1166
RNA type processed_transcript
GC content 0.39
exon number 4
gene id XLOC_037657
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9735493 ~ 9842149 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGATGGAAAACAATGAACCCTTTTGCTAATCGCGCAGAGGCAGGGAATTTTACACAATGGACTATGGAAACAGTTTCCTGTgCAGGAGGCTCAAAGCAAATCAAAGGTGTGTGCTAATGTGTTCTGTGGTGCTGGACGAGAGTGTGCCGTGAATGAGAAAGGAGAACCCAGCTGTCTGTGCATTGAGCAATGCAAGACTCATAAGCGCTCGGTGTGTGGCAGTAATGGAAAGACATACCGGAACCACTGCGAACTGCATCGTGATGCCTGTCTCACTGGACTGAAGATCCAAGTGGCTCATGATGGACACTGCAAAGGATGATGGGTCCTATGCAATCTGCTTTCAACCACAGGAAGTGTGATGCAGGAGGACCTCAGCAGCCAATACGCTTGCTTCTCAACATTTACTGAACCACATCTCAGTGTTCCAATCTGCAGCACATTTACGGATACTCTTCTCCACCACAGCTCCAACTGTGTATTCAGTTTCAGTCTTCGCAGTTGCAATATTATAGTTAAATAAAATCGGCTATCAAAGTGGTCACTAGATAATGGCTTAAACTATATTGTAATGGTGCCATAGAATAAAAATCAGGATATACAGTACATAGGCAAAGCTGAGTGATAAGAGTACAGTACCTTGATTGAAATGACCATTGTTCCACTCCTTGTGAAAAACGGGCCAAAACACAGACTATTAATTTGCacacaaaattaataatatgCATGCCAGAGGCtgcatttgattggccacaacatttcctatattttttcccCTGATTTTTAGGTTTATCTTAGCTTGTATGATGTtatatgtgggactcttattttgaaaacaggacCAGCAGGACATGAACTCTGGGTATCATTAGGTAGTGGGCAGTTATAACGTCTAATTAACTGTATCTTTAgttagtttaaaatgtatatcGGGAAACTTGCTAAGTACTTTTTAATGAGGCAACAGACACATTTACATTTGTAATGGAACACTGCTGAATTAGTGCTTAATGCAAGTTTTAATCTTGTTATGTCTCTCAGATTCTAAATAAGCatctaaaactattttttttatatcagagaacaatttaatcAATGTACTCTATGGCACATTTAAATATCCTTTTTTAGATCAGAAATGACagattctaaaataaaaacatt

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3029 Predicted to enable calcium ion binding activity. Acts upstream of or within dorsal/ventral pattern formation; notochord cell differentiation; and regulation of BMP signaling pathway. Predicted to be located in extracellular region. Is expressed in several structures, including axis; central nervous system; fin; head mesenchyme; and mesoderm. Orthologous to human FSTL1 (follistatin like 1).

Ensembl:

ensembl_id ENSDART00000145158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 399469 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 481265 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 481275 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 481296 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 719820 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 563061 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1749757 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1751887 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1765993 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1765993 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073933 mRNA downstream 38123 9719225 ~ 9732212 (-) True XLOC_037656
TCONS_00073930 mRNA downstream 64823 9675926 ~ 9705512 (-) False XLOC_037655
TCONS_00073932 mRNA downstream 73357 9679498 ~ 9696978 (-) True XLOC_037655
TCONS_00073931 mRNA downstream 80968 9679498 ~ 9689367 (-) False XLOC_037655
TCONS_00073929 mRNA downstream 99091 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073937 mRNA upstream 147744 9953063 ~ 9960940 (-) True XLOC_037658
TCONS_00073938 mRNA upstream 164668 9969987 ~ 9977900 (-) False XLOC_037659
TCONS_00073939 mRNA upstream 164668 9969987 ~ 9982718 (-) False XLOC_037659
TCONS_00073940 mRNA upstream 164668 9969987 ~ 9989660 (-) False XLOC_037659
TCONS_00073941 mRNA upstream 164955 9970274 ~ 9980704 (-) False XLOC_037659
TCONS_00073901 other downstream 2115034 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2231312 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 3052534 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 3361064 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 5323231 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073961 other upstream 1040599 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1743453 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1746285 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 1766654 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 2017060 11822379 ~ 11855305 (-) True XLOC_037675

Expression Profile

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