RNA id: XM_039803441.1


Basic Information

Item Value
RNA id XM_039803441.1
length 2095
RNA type mRNA
GC content 0.55
exon number 11
gene id fbxl17
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24583288 ~ 24820851 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGCCCTTCTCGGCTTCCTTCCCCCTGCTCTCTTGGTGCGGAAGTGCTGTCctccagagcagcagcagagccagAGCTGCCACTGTTTGGGTAAACACAACGCTGGTTCAGTAGTAGGTTTTCTCGCCGCCGCGCCTCTCCGTCCGGACTTGTCAGCACACATCTTGACCGTGCAGCATAGCAGTATTATGCGAGTACCGTCCGGAGTGCGGGAGCGCCGTGTGAAGTGAGTTTCCTTGAGTCATCTATATGGGCCATCTTCTCTCGAAAAATGGTTACCGCCTGAAGAAGAGGACACACAAGTTGCATCataggaagaagaagaagaggaactGTTTCCTGCAGCTGCCTTGCATGCTCTGCTTCATTGTCCACAGCAACAGCAGCGGTCTTGACGACGACAGCGACCATTTGGAGGCCGGTGTCAACGGCACTGTGTGCCGTCACAACAGCATCACTGGAATCAGTGTCCCTGGTGTGGCCGGAGTTGGCATTGGAGCAGCAACTGCCTCGAAGCTCGCCGAGCGATACGCAACACTCACATCTCCTGAGGATTGCTCTAAGTTCCTGTTGTCACCACGGGAGCTGGTTATCTGGGAGGGCCAAGGGAGGAGCCTTTTATCAGCTGTTCCTGCCAAACTGATTCCACCGCCGGCGCTGTTCCGAACCGCTGGCGTATCTGTGACCGTGGCCATACCTGTACCTGTGCCTGGCTGCACCAACAACTACACTGAGATGGTGTGTAAGAGGAAGTGCTCCGAGGTGCAGAGGTGCACCCCCTGTAAGCAGCCGCGCTGCGCCTTCGCTGCCCCTGACGGAGTGCTGGAGAATGGGGgagtgggaggaggagggggagaggcTGCCTCAAACTCTGAAACTGGCCACTGCCACCTTCCCCTCTGTccacttccctcctcctccgcttcctcctcctctgcctcctcctcttcctcctcacctGCTGACGGCTGCTGTGGGTTGGGTCTTCATGCTGATTTGCCCCACAGTTCAGACTCATCCCCCTGCTGCCTGCATCATTATGACGACTGCCAGGCGCGAAGTTCTGACGCTGCTGATCACTCGAGTATCAACCACCTGCcttcctccatccttctcaagGTGCTCTCCCACTTGACAGTGAAGGAGCGCTGTCTGTGTGCCTCTCTGGTGTGTAAGTACTGGAGGGACCTCTGCTTGGACTTCCAATTCTGGAAGCAAATCGACCTCAGTGGCCTACAACAAGTAAATGATGATCTCCTGGTGAAAATAGCCTCTCGGAGGCAGAATGTGACGGAGATTAACATCTCGGATTGCAGAGGGGTCCATGACCATGGTGTGTCCTCCCTGGCCTCACACTGTCCAGGCCTGCAGAAGTATACGGCGTACCGCTGCAAGCAGCTGGGTGACATGTCCCTCTCGGCCTTGGCTTTACACTGCCCTCTGCTGGTGAAGGTGCATGTTGGCAACCAGGACAAACTGACGGATGAAGCACTAAAAAAGATGGGAGAGCACTGCAGTGAGATGAAGGACATCCACTTGGGTCAGTGTTACAGTATCACAGATGAAGGCATGGTGGCCTTGGCTAGAGGATGCCCTAAGCTGCAGAGACTCTACTTGCAAGAGAACAAACTGGTCACTGATCGGTCCGTGCGAGCGGTTGCAGAGCATTGTCCTGAGCTGCAGTTTGTTGGCTTCATGGGATGCCCGGTGACCTCTCAGGGAGTCATCCATCTCACTGCGCTACGGAACCTGAGTGTCCTTGACCTGCGGCACATCTCGGAGCTCAACAATGAGACGGTGATGGAGGTGGTGAGGAAATGTCGCAACCTCAGTTCCCTCAACCTCTGCCTCAACTGGAGCATCAACGACCGGTGTGTGGAAATCATCGCCAAAGAGGGGAGAAGTCTGAAGGAGCTCTATCTTGTGTCTTGTAAAATCACAGACCACGttgttGCAAAGccgttttgtgtgtttttgtatgtgtgtaccCTGGGAGTTCCACAAATGAAAGCTACCAGCTGTGTAGCCAACTACTGCTTCATGGTGTCTACTGTTTTCAAGAGTTGGGTAATTGTTTAAATGTCTGCAAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86042 lncRNA downstream 364986 24293653 ~ 24293956 (-) True G64250
TU86041 lncRNA downstream 365343 24293015 ~ 24293599 (-) True G64249
TU86025 lncRNA downstream 443853 24213895 ~ 24215089 (-) True G64234
TU86003 lncRNA downstream 485266 24173462 ~ 24173676 (-) True G64214
TU85998 lncRNA downstream 504263 24151066 ~ 24154679 (-) True G64209
TU86132 lncRNA upstream 55773 24876624 ~ 24937440 (-) False lzts3b
TU86157 lncRNA upstream 193454 25014305 ~ 25016880 (-) False rnf165b
TU86168 lncRNA upstream 193454 25014305 ~ 25016880 (-) False rnf165b
XR_005639413.1 lncRNA upstream 224044 25044895 ~ 25047047 (-) True LOC120560057
TU86263 lncRNA upstream 270119 25090970 ~ 25093363 (-) False mapkapk5
XM_039804142.1 mRNA downstream 160955 24406178 ~ 24497987 (-) False efna5b
XM_039804141.1 mRNA downstream 160955 24406178 ~ 24497987 (-) True efna5b
XM_039804014.1 mRNA downstream 358537 24298996 ~ 24300405 (-) True LOC120561047
XM_039803388.1 mRNA downstream 489274 24167293 ~ 24169668 (-) False LOC120560666
XM_039802667.1 mRNA upstream 16810 24837661 ~ 24842186 (-) False LOC120560316
XM_039802669.1 mRNA upstream 16810 24837661 ~ 24841275 (-) False LOC120560316
XM_039802668.1 mRNA upstream 16810 24837661 ~ 24841274 (-) False LOC120560316
XM_039802665.1 mRNA upstream 16810 24837661 ~ 24841274 (-) True LOC120560316
XM_039802671.1 mRNA upstream 28155 24849006 ~ 24855441 (-) False slc35d2
TU85750 other downstream 1377856 23274920 ~ 23281086 (-) False smim15
TU85596 other downstream 1825853 22830195 ~ 22833089 (-) True G63882
XR_005639466.1 other downstream 3032035 21616223 ~ 21626907 (-) False rmi1
TU85094 other downstream 3966663 20691878 ~ 20692279 (-) True G63487
TU84919 other downstream 4376731 20270777 ~ 20282211 (-) True G63345
TU86268 other upstream 245994 25066845 ~ 25070763 (-) False LOC120560369
XR_005639498.1 other upstream 669114 25489965 ~ 25547852 (-) False commd10
TU86475 other upstream 838724 25659575 ~ 25663370 (-) False mrps36
TU86476 other upstream 838724 25659575 ~ 25663370 (-) False mrps36
TU86477 other upstream 838724 25659575 ~ 25663370 (-) True mrps36

Expression Profile