RNA id: XM_039803484.1


Basic Information

Item Value
RNA id XM_039803484.1
length 3465
RNA type mRNA
GC content 0.43
exon number 3
gene id pheta1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25210548 ~ 25215393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCATAATGCAGGTAAAGCCGCATCCGGTAGCAGCTGTCTAAATGCCAACTTTCCAAGGGCAAAGACGAGGTGCGCATGTTTTAAGTCACCGCTCATCCGGATGACGAGAGATTCACAGCAGGAAAGTTGTAATGACGATCCCGCCCAGCCTATTGCGAGTGGATAGTGTCATTCAAATCATAcccaggagaaggagaaggagcagGCTAACCTCCCCGTCGTCACCACCGTCTCCTTCCGTAGGTTATCCGTGGCACTATCCATTCGCCATACCCAGTCGAGCTGTCCGCGCACCACACAACACGTGCCCCCTCCCTGTCGGTGACGTGCTCGGGAAGAAAACGGAAAGAAGAAAGAGCGATAAAGGGGAAAATAAACAACGGGGGAGATTGTCTGCCTGAGGAGGCGTCTTCATCTGCAGCCTTAATTTGGAGAGAccgaaaaagacaaaacaagatGGAGACATGTCAAGTGATTAGCTCCAGGTGTGATAGGAGGACAGTGGTGGATTTCAGCAGGTTAAGAGTTTAAACACATAAATAAAGAATCTACTAAGGAAAAGAAGGATGAAGCTGAACGAACGCAGCGTGGCGCACTACGCCACCTGTGACTCCCCGCCAGACAAGACAGGCTTCCTGTTCAAGAAGGGTGAGCGCAACACAGCGTATCACCGCCGCTGGTTTGTGCTGAAGGGTAACATGCTCTTCTACTTTGAGGAGCGCGACAGCCGAGAGCCCATCGGCGTCATCGTCCTTGAAGGATGCACCGTAGAGCTTTGCGAGTCAGCCGAGGAGTTTGCCTTCGCCATCAAGTTTGACTGCGCCAAAGCGCGGGTGTACAAGATGGCTGCTGAGAACCAAGCAGCCATGGAGTCATGGGTGAAAGCGTTGTCGAGGGCCAGCTTTGACTACATGAGGCTGGTGGTGAAGGAGCTGGAGAGGCAGCTGGAGGAGATCCAGGAGGCTGCAGGAGGTGGCTGTGTCGGGGCTGGAGTTGGAGGCCTGCAGGGCAGGCCTAAGTCGTCCTCCAGGCGAAACCAGGTGGTGGCACGCTCTAGGTCTGGAGCATCCTCTTCTACATCATCTTCATCTTCCATATCGTCATCATCAAGTGCCTCTCCCATGGCAGGCCCCTTCCCTGCCCAAAAGAGCCTCCAGGATGAGGTGCAGCTCTTCTCTGATTGTTCCAAGGAGAACGGAGTTGCATGGAGTAAACCGCCAGCTGCCTTTGCTAACGGCTTTGTTGAGGGAGCGTCTTCCTGTGTGGCCTGGGAAGCGTGCACAGACTCTGGGAATAACACTGTGATTGGTTATGGGGCTGATGGGATGAGGGCTCCACCAGTGCCACCCAGGAGAAGAGGAGCCTCTCTGGAAAGCCCAGTCTCCCCTGGCACTGGCTGCTTCTCCAAACTCCATGACTGGTACGGCAGAGAGGTGGAGGAACTGAGAGTGCAGTGGCTGCAGAGCCAGTGAAGTAATGGattatctctttttttccacatttttatcattccttccttcctgatCATTCTGCAATGTTAAACCCTTTTGAACTCAACTTAACAGGGCACAAAACTTATTTGCAAATTTCAGTCTTATCACCTATCAAAAAAGACAAATACTGATTTAAGAATGATTCCAGATCCTGTCTGGCACAGGGGAATCAATCTTCTGCATCAACACTATCCATTGTACAATCCAATACAAAATATGCTCTTTTCCacagtttttttaatgtaatttgcCATGGACAATTAAAATTAGTAGATACAATTTAGAAAAGTATGTGCTATTATTATATTGCCAATATTCAAGATTATTTCTGCCCTTCTAGCTTCCCAATGTACTTGTGCAATTGGGgtcagttttctttaaaattgtAGCAACCTTGATCTAAACCATGTTTTTCTTCAGGTATACATGGAAACTACGGTGTTAAGCATTTGAAAAATgggataaaattaaataaataactgctaaaatcaccacctttttttccaATCCCAGCCTGGCAAGGGTGTTTTTGTTATATGCCAATGACATAAAGAAGgccacatactgtaaataacGATCTGAAGTCATTGCACAAAACAAATCCACATGGATCAGGTTGCTATTGTATAGTGACACGTTATCCACGGCGTACAAAGGTGAATGTAACAGGAAGTCCTGCAGCTGTGTGATTgatgaaaaaatgataaaaaaaagctgtttaagtacAGTTAAGGATGTTTTTAATAATCTAATGTCAAGGGTACCAGGATAATtaacagcatgtttaaaaagaaattccTGTAAACTCTGGATAAGAAGTGTTTGGGCAAAACTAGTCCAGTTTCTCCTCCCTATTCCCAGCGGGATATATTCCACCCCAGAGACCCTTGTGGTTGCCAAGGTCAGAACATCCTGTTGCCAGTGTCTGGGGACCACGGTGGGAGCTGGATGTCTCGCTCAGAGCAACACGctggtatttttagcccttgCTAGCCAGCGGCCAGATGATGCTGTGTCACAAGGGTGCTTGTCACTTAGTTTTCTTTTGACTCTTCTTGAACTTACAGGACTTTAACACTTGTCATTGTAATTCTGTGACAATTTCATATCATACAATCAAGTCAACTTAATTTCatcatattgtttgtttgttacagCTGATTAACGTGAATGTTATGTTATGAGTGTAACTGTTAGAGGCCTATACTTTATTTAAACATCTAACCTCTtggtttgtatattaatattttacTCTTCCATGTTGGAAATTAATACCAGCAGTCTGAAAAAACAggcattttaaaacatttacttTTATAATTCTATATCCAATCACATAGCCGCTtacgtttttgttttatatgtgCCTTATGTTATATTTATTAACTGTTATTGCACTTGCAATCACTACcatactttctttctttctttgctaAGGCTCATGTTGTTGCAGTCACTTTTTGACAATGGCTTTCAGTCTGCATCATTGCGCAGCACCATCATTCCTGTCATACACTTGGCTTGTACAGTgtggattgttttttttcaaacggCTGCATCAGGGCGGTATGCTTTTGATAAGCATTAACTAaaattattgttgttgtaccaATTTTATTAACTCCAGAAGAGCATTACTGTAATTACAGatgacaagtctttttttttttctaacaatAATATTTAAAGGAAAATGTGATTGTGtcaaatcaaccatataaatgATCATCTTTATTCAAGAGTGCCAAATGAGGAATGCAACATAAATGCACAATTATTAAATTGTcacgtttttctttttcaattgaCTTCCACGATTGTAGTACACATTTTCAATGTTATAGTACACAATATGAGTATTATTTAAAATGACCAATAATATTAAACATATTGTCCTGACATGGTACCCTAAAAAGATGATTGTTAAAAAGCATTTGTTGTAAACCATTCAATAAACGGTGTCATTAATA

Function

GO: NA

KEGG:

id description
K23791 PHETA; sesquipedalian

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86263 lncRNA downstream 117185 25090970 ~ 25093363 (-) False mapkapk5
XR_005639413.1 lncRNA downstream 163501 25044895 ~ 25047047 (-) True LOC120560057
TU86157 lncRNA downstream 193668 25014305 ~ 25016880 (-) False rnf165b
TU86168 lncRNA downstream 193668 25014305 ~ 25016880 (-) False rnf165b
TU86132 lncRNA downstream 273108 24876624 ~ 24937440 (-) False lzts3b
TU86426 lncRNA upstream 354581 25569974 ~ 25573095 (-) False G64541
TU86427 lncRNA upstream 398120 25613513 ~ 25625499 (-) True G64541
TU86583 lncRNA upstream 709176 25924569 ~ 25924785 (-) True G64673
TU86615 lncRNA upstream 736141 25951534 ~ 25952579 (-) True G64693
TU86659 lncRNA upstream 963756 26179149 ~ 26180205 (-) True G64730
XM_039804589.1 mRNA downstream 2487 25146540 ~ 25208061 (-) False sh2b3
XM_039804590.1 mRNA downstream 2487 25146540 ~ 25208061 (-) True sh2b3
XM_039802779.1 mRNA downstream 105118 25093566 ~ 25105430 (-) False mapkapk5
XM_039802778.1 mRNA downstream 105119 25089935 ~ 25105429 (-) True mapkapk5
XM_039802782.1 mRNA downstream 129787 25066761 ~ 25080761 (-) False LOC120560369
XM_039803486.1 mRNA upstream 3955 25219348 ~ 25231908 (-) True prr16
XM_039803489.1 mRNA upstream 44548 25259941 ~ 25320087 (-) False dmxl1
XM_039803495.1 mRNA upstream 44548 25259941 ~ 25320087 (-) False dmxl1
XM_039803488.1 mRNA upstream 44548 25259941 ~ 25320087 (-) False dmxl1
XM_039803494.1 mRNA upstream 44548 25259941 ~ 25320087 (-) False dmxl1
TU86268 other downstream 139785 25066845 ~ 25070763 (-) False LOC120560369
TU85750 other downstream 1929462 23274920 ~ 23281086 (-) False smim15
TU85596 other downstream 2377459 22830195 ~ 22833089 (-) True G63882
XR_005639466.1 other downstream 3583641 21616223 ~ 21626907 (-) False rmi1
TU85094 other downstream 4518269 20691878 ~ 20692279 (-) True G63487
XR_005639498.1 other upstream 274572 25489965 ~ 25547852 (-) False commd10
TU86475 other upstream 444182 25659575 ~ 25663370 (-) False mrps36
TU86476 other upstream 444182 25659575 ~ 25663370 (-) False mrps36
TU86477 other upstream 444182 25659575 ~ 25663370 (-) True mrps36
TU86478 other upstream 444182 25659575 ~ 25663370 (-) False mrps36

Expression Profile