RNA id: XM_034303811.1


Basic Information

Item Value
RNA id XM_034303811.1
length 2201
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC113547238
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4479498 ~ 4487366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGAAGTGACCCACACAGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGATGGCTtaactcaaataaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCCCAACAGAACTCAACATTTTGCTCatgactctctctcactgagctgtGAAGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtCTCAGGTTCTAGATCCGGTGGTGGAACAGCAGGAGCGGCTGTGGGTTTGGGAATTTTGTTCATCGCCTTACTTATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagGAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACAACACTTCAGGCTGTAGAAAGTGAACACATTTATGCCACTGTGGATCAGGCAGATACGAGTGGAACAGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACTCTCAGGTCacgaagaaaaagaagacaaatcGGAAGAATGGTGCTGATGCTGAACCTGGTGTTAGTGATGTGACTTATGCTGAGATTCAACTAAAACCAATGAAAAAAGCTAAAAGAATGAAAGAGAAATCCAGTATGGGTGATGATATTGTCTACTCAGAGCTGCACCAGAACATTGAGtgagCCATGTGTCTTTTTACACTGATGAAGCTACAGTCATCAGACAGATAACTGGAGAACCGTGAATCGtgtttgtcttctgtttttcctaAAATGCTCAGCTGTTGAACTTTTAAATTGCTATATTCTAAGCTTGGATGATGCCAAACCTGGCAGCTGCTCTGAGAACTTGCTCACATCATGCATTCACTGATGAACCCTGAAGATATGTGTAAATAACAGAAGATCAGGCCATGGATCAAGTCATTCTAAAGAGTCTAATGCCCCACCCCCCAACACTCAGCTTCCTTGCCCTTATCGGGATGACATCCCAGGAGAATGTGACTTGCCTAAGAGGCTTTACTGATCAAAGAAGTTCTTCACTCAGATGCTCCTTGTTTTCTGAGGTACAACCCCAGTAAACCAGAGAAGGCGGAGAACTCTGGAATAGTGTTTCAATCTCTGCGATCTCTATGCAATCTCTGTGCAATCTCtatatgtgtttttaaatccagatttttTTATGAAGTTACTTGTTAGTCATAGTCCATATTTATCTTGTTAAATATACTTCATGATTAGTAGTagcatatatttataattaagtCATTACAGTTTTTCACAATTACTAACAGGCAGTCTTTGGTTCCAAGTTTACTTTTTAGGAATTTGTTAGAATAACAGTGCTTTATGTGGAACAAACAATAGAATGAACTGCAGTGAGTTTGGGTGTAAACAATTATCACCCCTGGTGAGTatactgatatacagtataaagtatatagtatacactatatggtcaaaagtttgtggatacctgaccatcacacccatatgtggttcttctccaaactgttgccacaaagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69979 lncRNA upstream 92692 4049152 ~ 4386806 (+) False LOC117597054
TU70012 lncRNA upstream 106941 4372121 ~ 4372557 (+) False LOC117597054
TU70002 lncRNA upstream 183033 4293289 ~ 4296465 (+) False LOC113547236
XR_004578031.1 lncRNA upstream 360908 4117786 ~ 4118590 (+) True LOC117597097
TU69985 lncRNA upstream 418657 4058274 ~ 4060841 (+) False LOC113545588
TU70170 lncRNA downstream 68029 4555395 ~ 4555599 (+) True G59304
TU70208 lncRNA downstream 176245 4663611 ~ 4664466 (+) True G59338
TU70213 lncRNA downstream 178646 4666012 ~ 4666455 (+) True G59340
TU70215 lncRNA downstream 182497 4669863 ~ 4670083 (+) True G59342
TU70216 lncRNA downstream 183614 4670980 ~ 4671460 (+) True G59343
XM_034303591.1 mRNA upstream 48492 4417549 ~ 4431006 (+) True LOC117597057
XM_034303590.1 mRNA upstream 71112 4395485 ~ 4408386 (+) True LOC117597055
XM_034303589.1 mRNA upstream 85493 4371557 ~ 4394005 (+) True LOC117597054
XM_034303799.1 mRNA upstream 145331 4315778 ~ 4334167 (+) True LOC113537671
XM_034303816.1 mRNA upstream 184361 4290618 ~ 4295137 (+) True LOC113547236
XM_034303803.1 mRNA downstream 16186 4503552 ~ 4513463 (+) False LOC117597089
XM_026947464.2 mRNA downstream 45555 4532921 ~ 4553038 (+) False shrprbck1r
XM_026947463.2 mRNA downstream 45556 4532922 ~ 4553038 (+) False shrprbck1r
XM_026947552.2 mRNA downstream 252204 4739570 ~ 4746302 (+) True mnx1
XM_034303594.1 mRNA downstream 286820 4774186 ~ 4789253 (+) True LOC113547242
XR_004578033.1 other upstream 473157 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 626931 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 749150 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1677279 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1680070 2799356 ~ 2799428 (+) True trnav-aac_16
XR_003404798.2 other downstream 45555 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 163111 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 220076 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 467769 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 486829 4974195 ~ 5008133 (+) True G59492

Expression Profile