RNA id: TU134862


Basic Information

Item Value
RNA id TU134862
length 1690
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G114244
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12887208 ~ 12904882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCAAACTAAATTTGTAGTATtccaaacagcatggaaggacaGCCTTCTTAGCTATAGAAAGGCACTTAATGCTGCTAGAACAGCCTATCACTCCACCCTAATAgaggacaacaaaaataatcctgGATTCTAAATTAATACTGCTGCAAAGTTAACTAGGCAAAAAGACCACCATAGAATCATGCACACCACTGcagccagagttcttactagaagcagaagatatgaccacatcacccctatcttatccacactgcactgactCCCAGTAGAATTTTGCACTTATAAAATACTGCTATTGCCCAATAAAGCACTGAACTGTCTcacaccacagtacctgagcaaatATCTGGTCGTTTATGATCCACTTCACCTGGTTCGATCAAAAGTTGCAGGTCCTTTTTGGTACCTCGAAaaatgaaggctacagcaattttacaaatttgttAATTATAACACCACCTAGAGGTGAATTTAGACAAACCTCCTTGGGGACCCCTAGGGTGACGTCACTTATCTATAAAATCTGGTAAGAATACGTCACACCGTTGCTGAGATATGCCTTCACATACTGTTTGGCAGTTTTGCCGTCAAATTTGTCTGCGTGTTAAGAGCAAACTGTTCcatatatcaaaaataaaaaaaaaaaaaaattttttttgggaTAGTCTAACAATGCCATGATTCAAacttggtgatgattggacaaagtTGGTAGGAgaaagaagagggaaaaaaaaacaacaactgtttttgaaaaaattaaaaaggcgGAAAATCCATTATGGCATAAGTTAACATCACAGTGTCTGCTGAACTCAGCTAGACCCAAAGAATCGGAGTAAAGTAGAATCTCTTTTGAACAACATTCTGCTGCAGTGTTAATGTAAACGTATgtctaaatatactgtattgctGGTGTTAAAGGGCTTGAGAAGAAGAAGCAGTAGTAGTCATACTCAGTGTAAACAACTTACAAATCTTTCTGTACTTCTCGGTCATCAAAGCGTCTCCCAATCAGGCGCTTGGTTGCGTAGAGTGTGTTGTTTGGATTAGTCACAGCTTGCCTTTTGGCTGGCATACCCACCAGTCTCTCCCCTTCAGCTGTGAAGGCTACAACTGATGGAGTTGTCCTTGCACCTTCTGCATTTTCAAGCACCTTGCTTGTTTACCATCCATGACAGCCACACAAGAATTTGTGGTCCCCAGGTCAATTCCAATCACTGCTCCTTTGATTGCTTCTGAACTGTAACACCCATTCAACACAAGatgaaaaatatgtaaatgaaattaaaaacacattaaagtggacacattttaaaaaccttttaacGACTGTTGCACTTTACTCACGCATATTCACGTCTGGATGCAGTCTGAATGGCATATTCCGTCAACCTATTCCAGCAAGCCTTTCACAAAAGAGGGTACACCTCGGACGCAGCTTGGAGAAAGGTTTCGTGAAACTGTTTTTGCTACGTTTAACATTTTCCTTAATTTATAAACACGGGTGTGGTATACTATTACTGAACCAAGCAAGCAGTTACAAATAATTTCTCCTAAATGAGTTCTAGTAATCCTCACGGTCACTACGAGTAGATGACGTCCACCTTGCCGACGGTATGCTTCTGGAACTATCTTTTACACCACATGGCTTGATGACACTACTAGGCAACACCACGTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134858 lncRNA upstream 4082 12878689 ~ 12883126 (+) True G114241
XR_004578476.1 lncRNA upstream 159349 12726799 ~ 12727859 (+) True LOC117597727
TU134796 lncRNA upstream 189751 12697195 ~ 12697457 (+) False LOC113542746
TU134795 lncRNA upstream 190088 12696755 ~ 12697120 (+) False LOC113542746
TU134793 lncRNA upstream 214427 12672150 ~ 12672781 (+) True G114186
TU134868 lncRNA downstream 2075 12906957 ~ 12907213 (+) True G114250
TU134886 lncRNA downstream 101633 13006515 ~ 13010071 (+) True G114268
XR_003403005.2 lncRNA downstream 112691 13017573 ~ 13021651 (+) True LOC113528898
TU134924 lncRNA downstream 152727 13057609 ~ 13058192 (+) True G114304
TU134940 lncRNA downstream 155265 13060147 ~ 13060538 (+) True G114319
XM_034306149.1 mRNA upstream 172477 12708022 ~ 12714731 (+) False LOC117597726
XM_034306146.1 mRNA upstream 172477 12708022 ~ 12714731 (+) False LOC117597726
XM_034306145.1 mRNA upstream 174207 12708018 ~ 12713001 (+) False LOC117597726
XM_026917604.2 mRNA downstream 161022 13065904 ~ 13490535 (+) False diaph2
XM_026917602.2 mRNA downstream 161023 13065905 ~ 13490535 (+) True diaph2
XM_026917605.2 mRNA downstream 161023 13065905 ~ 13490535 (+) False diaph2
XM_026917603.2 mRNA downstream 162422 13067304 ~ 13490535 (+) False diaph2
XM_026917577.2 mRNA downstream 1212066 14116948 ~ 14158247 (+) True tnmd
XR_004578475.1 other upstream 172477 12713570 ~ 12714731 (+) False LOC117597726
XR_004578474.1 other upstream 174207 12708009 ~ 12713001 (+) True LOC117597726
XR_004578424.1 other upstream 196129 12689634 ~ 12691079 (+) False LOC113542746
XR_004578423.1 other upstream 196129 12689634 ~ 12691079 (+) False LOC113542746
TU134395 other upstream 623946 12259423 ~ 12263262 (+) True G113831
trnae-cuc_17 other downstream 425905 13330787 ~ 13330858 (+) True trnae-cuc_17
trnat-agu_9 other downstream 1514906 14419788 ~ 14419861 (+) True trnat-agu_9
TU135978 other downstream 2094952 14999834 ~ 15012185 (+) False ablim3
TU136030 other downstream 2146433 15051315 ~ 15052426 (+) False G115272
TU136032 other downstream 2149202 15054084 ~ 15055472 (+) True syce3

Expression Profile