RNA id: XM_026917603.2


Basic Information

Item Value
RNA id XM_026917603.2
length 6392
RNA type mRNA
GC content 0.43
exon number 29
gene id diaph2
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13065904 ~ 13490535 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgccttgttgatgagaaaggttaACAGAGAATGGCTGGTTCAAGCTGGcagaaggctacagtaactcagataaccactctgagcaattgtggtgagcaggaaagtatctcagaatgcacgtCAAACCTTGGGgctgatgggctacaacagcagaagaccttgtcgagttccacttctgtcagtcaagaacCGAAAGCAGAAGCTGCAGTAGGCTCAGGCTCAcaaaaactggacagctgaagactggaaaaatgtatcCTGGTCTGAAGAATCTCGATTTCTaatgaggcacacagatgATTTCCCAACACTGAAGCTGTTGCTGAACTGGTCAAGGCTGAATTTAGTGCCACTTACTACAACGTGCATTATCAACATTTggatttattaataatgtggAATAATTGTCCCACTCCACCTCCCCTATGGAATGGCTTTTGAAGAACTTGATTTCCTTCTAAAGTCCACAAAACCGGGTACTTTTTAAGCAGTACAGAACACCTTAACATTTGAAGGAGAGCTTTTCCTCAAAAATGGATCAGCAAGCAAGTGGTGTGGACGACCCCAATAAGCACCctaaaaagaaatcaaatgaGGATGATAGTAAGAACAAAAAGCTGAACATACATATTAAAACATTGGCTGATGACATGCGTGACAGGATTACAAGCTTTCGAAAGCAAGGCATAAAGAAGGAGAAGCCCATTATCCAGCACCCAACAGACCCCATCTCCACGCATTCTGAACTACCTATACCGCAGCCACTTTTTGATGAGCGTTCATTGAACCTCTCTGAAAAAGAGATTGTTGACTTGTTTGAAAAGATGATGGAGGATATGAACCTGAATGAAGACCGTAAAGCCCCTCTGCGTGAAAAGGACCTGAGCACTAAACGAGAGATGGTTGTCCAGTACATATCTGCCACAGCGAAATCTATAACTGGGAGCAAAGTTGCGGGGGGCCTGAGGAACAGCAAGCATGAGTGTACGCTGTCATCACAGGAATATGTACATGAGCTGCGGTCTGGCATTACTGAGGAGAAGTTGCTCAACTGCCTTGAGTCTCTGCGTGTGTCTCTAACCAGCAATCCTGTCAGCTGGGTGAATAATTTTGGTCATGAGGGTCTTGGACTGCTTTTGGATGTACTGGAGAAGCTGCTTGACAAGAAACAaCAAGAGGGCATTGACAAGAAGAACCAACACAAACTCATCCAGTGCCTCAAAGCCTTCATGAACAATAAGTATGGCCTGCAAAGGATACTCGGGGATGAACGAAGCCTCCTCCTTCTGGCCAGGGCTGTTGATCCCAAGCAGCCGAATATGATGACAGAGATTGTGAAGATCCTGTCTGCAGTCTGTATTATTGGCGAGGAAAACATTCTGGATAAGATCCTGGCAGCCATGACAATCGCAGCAGAGAGAAATAACAAAGAGAGATTTGCTTCAATAGTAGAGGGTCTGGAGAACCATGAAGCTCAGCAGCTCCAGACAGCCTGCATGCAACTAATCAATGCCCTGGTCACCTCTCCGGATGATCTGGACTTCAGAATCCATTTACGGAACGAGTTTCTGCGCTGTGGCCTGAAGAAGATCCTGCCAGAGCTGAAGGAGACGGAAGAATTGGACATTCAGCTGAAGGTGTTCAATGAGAATAAGGAGGAGGATTCTATTGAGCTGTCTCACCGGCTGGATGACATCCGCACAGAGATGGATGATATGGATGAGGTTTACCATATTCTGTCCAACATGGTGAAAGATACAGGCGCAGAGTCCTATTTCCTATCTATTCTTCAGCACTTGCTGCTCATCAGGAATGACTACTATATCAGACCTCAATACTACAAGGTGATTGAAGAGTGTGTGGCTCAGGTTGTTCTGCACCGGAGTGGAATGGACCCTGACTTTGGTTACAGAGAGAGACTAGATGTAGACTTCACCCAACTCATTGATCAGTGTGTAGATAAGGCCAAATTGGAGGAGAGTGAACAGAGAGCAGCTGAATTCTCCAAAAAGTTTGACGAGGAGTTCAGTGCACGACAGGAGGCACAAGCTGAGCTGCAGAAACAGGAGGAGAAAATCAGAGAGTTGGAGGGGAAGATCACCTCTTTACAAAGCCAGGTTGCAGCAGGAGACACTCAAAGAGTTCTATCACCACCACCCCCTCCTCCCCCTCTACCAGGAGCACCCCCTCCTCCCCCTCTACCAGGAGCAccccctccacctcctcctcccctTCCAGCAGGTATGggacctccaccaccaccaccaccaccaccacctggTTTTGGTCTGCCACCTGCACCCCTTCCTCCTGGAGGTGTTCTTGCACCTCCTCCACCTTTCCTTGGAGCCACAGGTCTCCCTCCAGTACCAGCTGTCCAAAAACTACCTTATGGGCTACAACCGAAGAAGACCTATAAACCTGACACAGCCATGAAGAGGGTCAACTGGTCCAAGATAGTGCCTCAAGAGATGGCAGAGAATTGCTTTTGGATCAAAGTCAAAGAGGAGAAATTTGAGAACCCGGACCTATTTGCCCAACTCTCACTTACTTTCTCATCCAAGTCCAGAGTGAAAAAGGACGTGGAGGAAATGGATAAGAGAATGACACAATttaagaaaaaagcaaaagagtTGAGAATCCTGGATGCCAAAACGGCCCAAAATCTGTcCATTTTCCTTGGATCTTTCCGAATGCCTTATGATGAGATCCGGGATGTTGTCTTGCAGGTGGATGAGGAGAAGCTGAGTGAGGCGTTAATCCagAACCTGATCAAGAATCTTCCTGAACAGAAGGAGCTGAGCGCCTTGGCTGAGCTGAAGAGTGAGTACGAGGAGCTGTGTGAGTCAGAGCAGTTTGGCATTGTGATGAGCTCAGTGAAGCTATTGCGCCCTCGTCTGAATGGAATCTTGTTCAAGCTGACATTTGAGGAGCAAGTAAACAACATCCGCCCTGACATCATGAATGTCACTTTTGCATGTGAGGAAGTGAAGAAGAGTGAGGGCTTCAGCAAGCTCCTGGAATTGGTACTGCTTGTGGGAAACTACATGAATGCTGGCTCCAGAAATGCCCAGACTTTCGGGTTTAACATCAACTTCCTCTGCAAGCTACGGGACACAAAGTCAACAGACCAGAATACAACACTTATGCATTTCTTGGCAGACAAATGTGAGGAGATGTATCCAGAGATCCTGAAGTTCCCTGATGAGCTGGAGCATGTGGAGAATGCCagcaaagTGTCTGCTCAGATCCTCAAAGCCATTTTGGACTCAATGGAGCGTCAGATCCAGAGGCTGGAGAATGACATCCAGAGCTTCCCCAAGACAGAGGACAAACAGGATAAGTTTGTGGAAAAAATGTCCGGTTTCTCCAAATATTCACGAGAACAGTACGAAAAGCTCTCCACCATGCACAAGAACATGCAGAAGCTCTATGAGAGCCTGGGAAGCTACTTTGCCTTTGACCCACACTCCATTAGCATTGAGGACTTTTTTGGGGACCTGGCTAACTTCCGCACTCGCTTCATGGAGGCTCTGAAGGAGAACCACAAGAAGAGGGAGATGGAAGAGAAGATCAAGCGGGCCAAGCTGGCGAAGGAGAAAGCTGAGCAGGAAAAGCAGGAACGGCAGCAGAAGAAAAAGCATCTGATTGACATGCACAAAGACGGAGACGAAACAGGTGTGATGGACAGCCTGATGGAGGCCCTGCAGTCTGGTGCAGCCTTCCGTGACCGCAGGAAAAGAACCCCACGCACTGACAACCGTCGCACTGGTTTGGAAAGATCACGCTCACGGCACAACACAAACACTATGGGGCGATGATGGCAGTCTGTCTGTGCATGTTAGCCAAGTGCCAAAGACCCATGAGTGGGTGCACAGTGGAGGCAAAAATATGGATAGCGCAGATTTGTGTGTGCCTTCCAGCATGGCAGGAATctcaaaacacatacacacacaaaaacaaaaaatgatccTCAGAAGTGAAGACTACAGACAAACAGCTTCACATGATTGCTACTATTACACTGCCTTACATATGCAACCTGTGTATTCCTTTCACTTCCTCATTGTGTTAAAAACTTccttaacatattttttttaatttccttgaAATATATTTGGTCATTTTCCTGTTTGTAATGGATTTGCCTTTATCTTTATGCTTCCTATAAAGCTAGTAGTTTCCTGTTGTCCATGAATGTTTGGGTAGGTTTGAGTGGTTGATctctgttttttgttattttaacaaCTAAACATTACATTGTAGTTGACAAAATGTTGATAAAATGATCTTGCAGACAGGTGTGTATGGTAGGACAGGGCTATATGGACTCATTTGCTGCCATTGATTGAACAAAACCATTGCCTGATTTGTACCCTGCTTTTCAGTCACTTAACCTGCTCACCAATCTTTCAGTTTCAACTTCTTCCAATCATGTTCTATCTATATaaaatgccattttattttaGCATCATTAAAATATGCTATCTTTTCTTATGCTATTTGTCTTAGAGGGGTGCACAGGACTGTTTTTAAATTCCACTCCTGCCAGCTCCAgcagttatttttaattgtaactgcttgtgatattttctaatgtacTTGCTTGGTTCCATATCCTCAAAACATGAAGAAACTTAAACCACAGTGACTCTGAccaataaagcatttactgtatatgaatgaatgagtgcaGTAAACTGTACACATCCTATATGCACCCATGTTAATCACTTTTTAACATCAGTTGGTAGTCATGTCTGACACACATGACAGTAAGTAGTCATGTCCTACACACATGACAGTAATCTCTTTCATGAGCTTATTAcccacaggatcccagtcctgatgcacatttttaatttgtctgGCAAATAACACTTATTTCATGTGAATCTGTAGTAGCATAAAAGATGAAACACTTTAAGCATATCCTTTAAGCACGTCCCATGTCAGAGGTTAGTGAGAAGATGTTTTAGAATACCTAGAGGTAAATAAGTATtgcagtttttatattttatgatacaGTATAATTTCTGTCTTGTTTGGTTCTCTGTTGTGAAACAGAGACAAGTTTTTAATCAAAAAATGTCAATAAGTGCTGACTTGTATGATCCATTGGCTGCTTTTAAGTGCTTGTTGCTTGTGGTGGTGACCCAGCCCACCCAAGCACTTTACtcaaacttctctgtccttcCCTGCTTTCTGAAAAGTGTTATATGtccaaaacagagaaaaaagtagtttagtttattgtgcagttttcatgtttcatgttttgtaTTTCATCCTTAGCCAGAGTTTAAGGAGTGCTGCTGTGTCCTTGAGAGGAGTAATGACAGCAATGATTCATGAATACATGACATTGTAGCTGCCTCTAAGTGGattgcattattaaaatcacactTTAGCCTCACCTGCCTTTTTCCTGTGGTTTGAATAACTGCTTGCCataatatgctttttttcataTACATATCACTGCAGGCAAATTTATGTAAAACACACTCTCTGTGCAATCAAAACAGAGGTGTTGGCTGATATGAGTCTGCTTTCTTGTGTGGGCACTAATAAAATAACTTATTTTTGCCCATGCTTGATGCATGGCTATAGAGACATCATCTTTGTTATAATATAGTGGCAAGAATTCCACTCTTATGCTATGACTACCCTTAAGCTGCAAAATGCACAGTTTTTAGCAAattttcatccattcatccatttttttgttgtgcAATAATCAAGGAACAGCAGTCAGTACAATATGCAGAAAGGCtgttataaaaaagaaatgaataaagaaataaaaacatctgaGCCAGTCCCTCAGACCATATGTCTTCAAGCACTGTAGTGTAGCTCAAAGCATTAATTTGCTTTTCTAATCAAAGCTGGCCTTTATCTGTTTTCCAGTCCCACACAAAGGAATATGTTTCACTCAAAGCTCTCAGTGGCTTCTGTTTAACTCATGTTAACGGTAATTACAGCATCTACCATGTCTGTGCTTGCTGCTCTAACTCTTATTGCTGTTACATATTCTAGTTAGCAGAATGTGTTGGCACTGCATACTTTTCACCTAAAAGTGCATTAAATCACATTGCACAGAAGCTTCCTTTTGCTGGGTAAATTTGCCaactttcattaaaaatgtcataaattgTTCTTATATACCAAGTTTATTTCTACAGTTTTACTGAAGGTATAAAAAGAATTTGATCAGCTGAAAAAGACctgttaaaattgttaaaaattcaCACATTATTATGATATAAAATTGCTGTTTCCTATTGTAACTTAACGCATTTTAAACAGGATGACATTGAAGCATTGTGTTTTAACAGGGTAAATAGTATGTGTCTCTTTTACTcaattaaaatgtcaaataCCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134945 lncRNA upstream 3356 13061759 ~ 13063948 (+) True G114322
TU134943 lncRNA upstream 3911 13061759 ~ 13063393 (+) False G114322
TU134940 lncRNA upstream 6766 13060147 ~ 13060538 (+) True G114319
TU134924 lncRNA upstream 9112 13057609 ~ 13058192 (+) True G114304
XR_003403005.2 lncRNA upstream 45653 13017573 ~ 13021651 (+) True LOC113528898
XR_003403000.2 lncRNA downstream 42465 13533000 ~ 13548812 (+) True LOC113528834
TU134974 lncRNA downstream 46154 13536689 ~ 13536987 (+) True G114349
TU134975 lncRNA downstream 47531 13538066 ~ 13540704 (+) True G114350
TU134963 lncRNA downstream 58720 13549255 ~ 13552447 (+) True G114338
TU134964 lncRNA downstream 68955 13559490 ~ 13560906 (+) True G114339
XM_034306149.1 mRNA upstream 352573 12708022 ~ 12714731 (+) False LOC117597726
XM_034306146.1 mRNA upstream 352573 12708022 ~ 12714731 (+) False LOC117597726
XM_034306145.1 mRNA upstream 354303 12708018 ~ 12713001 (+) False LOC117597726
XM_026917577.2 mRNA downstream 626413 14116948 ~ 14158247 (+) True tnmd
XM_026918591.2 mRNA downstream 727274 14217809 ~ 14230184 (+) False taf7
XM_026918590.2 mRNA downstream 727279 14217814 ~ 14230184 (+) True taf7
XM_026917432.2 mRNA downstream 743183 14233718 ~ 14245194 (+) True LOC113528743
XM_026918215.2 mRNA downstream 942632 14433167 ~ 14447796 (+) True xkrx
XR_004578475.1 other upstream 352573 12713570 ~ 12714731 (+) False LOC117597726
XR_004578474.1 other upstream 354303 12708009 ~ 12713001 (+) True LOC117597726
XR_004578424.1 other upstream 376225 12689634 ~ 12691079 (+) False LOC113542746
XR_004578423.1 other upstream 376225 12689634 ~ 12691079 (+) False LOC113542746
TU134395 other upstream 804042 12259423 ~ 12263262 (+) True G113831
trnat-agu_9 other downstream 929253 14419788 ~ 14419861 (+) True trnat-agu_9
TU135978 other downstream 1509299 14999834 ~ 15012185 (+) False ablim3
TU136030 other downstream 1560780 15051315 ~ 15052426 (+) False G115272
TU136032 other downstream 1563549 15054084 ~ 15055472 (+) True syce3
XR_003403057.1 other downstream 2252633 15743168 ~ 15743297 (+) True LOC113529420

Expression Profile