RNA id: XM_034306146.1


Basic Information

Item Value
RNA id XM_034306146.1
length 1534
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC117597726
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12708009 ~ 12714731 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttattttatttcaatgttgTTGCTGAGTTTTGTGTTAAAACTGTATGGGGAACATGCCTTCACACATGCTGTATTAAACCAGAGGGCAAGAGTTAACTTACACTTCAGCCACGGCGACTTCTCACATGGTGGGAAGTCCAGTGTTACCTCCAAATCACGTACTCTAACCAGCATTATATTACAACCCCACTATTAATGGAATTGTATAATATtaagtctgtttctttctgtaaacatgCCATTATACCCAGTAGCTAATGGCCATGGCTAATGTATGTCATGTGTGGTATCTGCATGCTTGTCTTCATGTGCGGAAGCTGTTGATGATTTGCAATTCCCAGTACctcatatacatttattataaacattaaaggtaaataagacCACATTACATGGACATTAAGAAGGGGGCAACCCGGGAGGGGTCGCTTGCAAATTAGCTGGAGGGCCAGCCAAGCCACTCTCCAATCATCTCCAAACCGACCTGCGGTTGGTTGAAGACCTCAAGAGGCCGGCTCATCTAAACTAACATAAAACCACATGCccaacacacagagaaacaaagaaatacaggaacgcaacaacaaagaacaaagaacagAGCCGGAGCGGGAGCTGGAGCTGAAACTGGAACGGAGCTGGGACCAGAACAGAGCTGGAACAGGAAGAGAACCTGCCCCAGAAGATTCCAAGACTTGCATCACCGAACCTCGCTTGACTCGACCCTTCGCCCAGCCGTCCAGACTGGAGCTGAGAGCAAGGATCACATCACAACGGGAAGTAAGAGAATGCTGCGCTGACCTGGATCTCAGAGAAAGTACCGGAATCCTCTATTCAGCTACAGTCTCACTCCTTACACCAAGGAGACCGGTCTGCAGCCTCCGCTGTGAGATTTTTCTGGGGATGTGTCTACCTGCTAGAGACTCTGTGTTTACAAACTGTGGGCAACGGTACCACTCGTGTTGCACGACCCATTTGtgtgccgctctgtctctctcttttttggaCGCCGCGCCGATTAGTCACGTGAGGACGCcggaattctttttattttgcattcagAGGACGGCGCTGCTGTTTTTCCTTAAACTGTTTTTCCTTAAACTGTTTTTTCTGGGTATTACAAATTGCTTTTTTTGATGttataaattgtttttctttttaaaggtgtaaaactgtttttttagaCGTTATTTTTTGTCAGTTATGTCttggttatattttgtttatgttcattgtttttctttgtgcacTTGTGCTTGTGCTTGAAGAGTTTAGATCTGCCTCTCTGAGGATTACAACTTGAGGCCCTGTCAGGCCCTGGGGCTAGGAggctagctgtttttttttagtgctgGTGGTGGTTTAACCGTGTGGAGTGTAGTGTGGCttggatttatttttcactgtgtctgtatgttgagttattcatttattcccCTCCCCCCATCTCAGCACTGCCAcactaggttaaataaataagtcttcaacctcgatttaaacactgagaccgtgtctgcttcacgtacattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134796 lncRNA upstream 10565 12697195 ~ 12697457 (+) False LOC113542746
TU134795 lncRNA upstream 10902 12696755 ~ 12697120 (+) False LOC113542746
TU134793 lncRNA upstream 35241 12672150 ~ 12672781 (+) True G114186
TU134792 lncRNA upstream 36171 12666755 ~ 12671851 (+) True G114185
TU134787 lncRNA upstream 42869 12664810 ~ 12665153 (+) True G114182
XR_004578476.1 lncRNA downstream 12068 12726799 ~ 12727859 (+) True LOC117597727
TU134858 lncRNA downstream 163958 12878689 ~ 12883126 (+) True G114241
TU134862 lncRNA downstream 172477 12887208 ~ 12904882 (+) True G114244
TU134868 lncRNA downstream 192226 12906957 ~ 12907213 (+) True G114250
TU134886 lncRNA downstream 291784 13006515 ~ 13010071 (+) True G114268
XM_034305919.1 mRNA upstream 4028 12689634 ~ 12703994 (+) False LOC113542746
XM_026940458.2 mRNA upstream 4028 12696858 ~ 12703994 (+) True LOC113542746
XM_026940459.2 mRNA upstream 4028 12702970 ~ 12703994 (+) False LOC113542746
XM_034306172.1 mRNA upstream 339785 12321260 ~ 12368237 (+) False csnk1a1
XM_026917604.2 mRNA downstream 351173 13065904 ~ 13490535 (+) False diaph2
XM_026917602.2 mRNA downstream 351174 13065905 ~ 13490535 (+) True diaph2
XM_026917605.2 mRNA downstream 351174 13065905 ~ 13490535 (+) False diaph2
XM_026917603.2 mRNA downstream 352573 13067304 ~ 13490535 (+) False diaph2
XM_026917577.2 mRNA downstream 1402217 14116948 ~ 14158247 (+) True tnmd
XR_004578424.1 other upstream 16943 12689634 ~ 12691079 (+) False LOC113542746
XR_004578423.1 other upstream 16943 12689634 ~ 12691079 (+) False LOC113542746
TU134398 other upstream 439887 12181309 ~ 12268135 (+) False st3gal5
TU134395 other upstream 444760 12259423 ~ 12263262 (+) True G113831
TU133470 other upstream 1817980 10887313 ~ 10890042 (+) False sh2d1ab
trnae-cuc_17 other downstream 616056 13330787 ~ 13330858 (+) True trnae-cuc_17
trnat-agu_9 other downstream 1705057 14419788 ~ 14419861 (+) True trnat-agu_9
TU135978 other downstream 2285103 14999834 ~ 15012185 (+) False ablim3
TU136030 other downstream 2336584 15051315 ~ 15052426 (+) False G115272
TU136032 other downstream 2339353 15054084 ~ 15055472 (+) True syce3

Expression Profile