RNA id: XM_026912678.2


Basic Information

Item Value
RNA id XM_026912678.2
length 5205
RNA type mRNA
GC content 0.51
exon number 30
gene id med14
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14538868 ~ 14553495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCCGTCCGCTGCAGTGGCTGGCTTCACTCACAGCTTAGCGGTGATGGCGGTCGGGAGCCATGGGGATTTTTCACGGCTAATTCAGCAGCAGGTTTAGAGTGATTTTCCATGGGGTGAAGGCGTGTTTTCCCGCCCAGGAACGTTAGAAACAGTAAAGCAGATCTTTAGTGGTTGCGCGGTGTGCGTTTGGAGGCTGAGCAGCGCGGATCTCCACACACTGGCCGTGTAAAATGGCTCCGGTGCAGATCGGCACAGAGGGCCAGCTGGTGCCCGTCGGGGGGCCGAGCACCGCGCCGCAGCCTGCCCCCGGAGCTCCGGCCACTCAGGGAGTCCGCCTCAGCGTCCTGATCGACTTCCTGCTTCAGCGGACATACCACGAAATAACGCTGCTGGCTGAACTACTCCCACGTAAAACTGACATGGAAAGGAAAATTGAAATTGTCCATTTTGCGAGCCGGACGCGGCAGCTCTTTGTCCGGCTGCTTGCACTTGTAAAGTGGGCCAGTAATGCTGGGAAAGTGGAGAGGTGTGCGATGATCTCTGCATTTTTGGACCAGCAAGCTTTCCTATTTGTTGACACAGCGGACAGACTGGCATCGTTAGCCCGGGATGCCTTGGTACATGCCCGCCTGCCCAGCTTTGCGATCCCTTTTGCCATTGATGTTCTGACTACAGGGTCATACCCACGTCTTCCCACATGCATCCGAgaCAAAATAATCCCTCCAGACCCTATCACCAAAGCAGAGAAGCAGTCAACACTGAACCAACTGAACCAAATCCTGCGCCATCGGCTCGTCACCACTGACTTGCCCCCTCAGCTGGCCAACCTGACTGTGGCTAATGGCCGGGTGAAGTTCCGGGTGGAAGGGGAGTTTGAAGCCACGGTAACGGTGATGGGGGACGACCCAGAGATTCCGTGGAGGTTGCTGAAACTGGAGATCCTGGTTGAGGACAAGGAAACAGGcgATGGCCGGGCTCTGGTGCACAGCATGCAGGTGAATTTCATCCATGAGCTGGTACAGTCTCGCCTATGTGCAGATGATAAGCCACTCCAGGATATGTATAACTGCCTACATTCATTTTGCCTTTCCCTTCAGCTGGAGGTGCTGCACTCTCAGACTCTGATGCTGATCAGAGAGCGCTGGGGAGATTTAGTGCAGGTGGAGCGCTACCTTCCCGCAAAGTGCCTCACCCTGGCTGTCTGGAATCAACAGGTGCTGGGTCGCAAGACAGGTACAGCATCGGTGCACAAAGTCAGCATCAAGATCGACGAAACAGATGGATCTAAGCCATTGCAGATTTCCCATGAGCCTCCGCTGCCAGCCTGTGATTCCAAACTAATGGAAAGAGCCATGAAGATTGACCACCTCTCAGTGGAAAAGCTTTTGATTGATAGTGTTCATGCCCGCTCCCATCAGAAGCTGCAGGAACTCAAAGCCATATTAAAGAGCAGCAATCCCAGTGACAACTCATTCATAGAGACTGCTCTTCCTACTCTCGTCATTCCTATTCTGGAGCCGTGTGGACGATCCGAGTGTCTTCACATATTCGTTGACTTGCACTCGGGCATGTTTCAGCCAATGCTATATGGAATTGATCAGTCAATGTTGGATGACATTGAGAAAACCATCAATGATGACATGAAGCGTATCACCACATGGTTACAGCAGCTGAAGTTCTGGTTGGGTGAGCAGCGGTGCAGACAGTCTGTGAAGCATCTACCCACAGTGTGCATAGATTCTCTCCACTTATCTAACTCCGCCTCTCATCCTGTGGGCAACCTTACAAAACACCGCCTCTTCATCAAACTCACCCGTCTCCCACAATACTACATCGTGGTTGAAATGTTTGACATCCCCAGCAAACCCACAGAACTGCAGTATAAATATTACTTCCTATCAGTCAGTCAGCCAGAGGGGGAGGATGGGCTGCCGTGTGCCCTGCTGCTGCAGCAGTTCAAGCCCGAGCTTGAGAAGCTGGTGCAGGACTTCTCCTCCGGCCGCTTGACCCGGCCTGGTACTAAGAGGAAGTTGTCAGCAGAGCAGGGTGCTACAGAGCCTAAAAAGCCCAAGCGCTCAGGGGAGATGTGTGCGTTCAATAAGGAGCTGGCTCACCTGGTAGCCATGTGTGACACCAACATGCCTCTCATTGGCCTGCGCTGTGAGCTGTCTAATATGGAGATTCCTCATCAAGGGGTCCAGGTTGAAGGAGACGGATGTAGCCATGCTATTCGTCTTCTCAGGGTGCCGCCTGCTAAAGGTGTGGGTGAGGAGACGAGGAAGGCTCTGGAtcgctctctgctggactgcaCCTTCAGATTGCAGGGCCGAAATAACCGCACATGGGTGGCAGAGCTGGTCTTTGCCAACTGCCCCCTCAACAGCACCTCAAGTAAAGAACAGGctTCGACGCGACATGTCTACCTGACATATGAGAACCCGCTGTCAGAGCCGGTGGGAGGTCGGAAGGTGGTGGAAATGTTTCTAAATGACTGGAACAGCATCAGCCAGCTGTATGAATGTGTGCTGGATTTCTCACGTGCTTTCCCTGAAATGCCCTCCTACTTGAGCCTCTTCTCTGAAATACGGTTGTATAACTATCGGAAATTAGTCCTGTGTTATGGCAACACAAAAGGCAGCTCTGTAACGATCCAGTGGAACTCTGTAACTCATCGCTTCCACCTTGCTCTGGGCACGGTCGGGCCAAACTCAGGCTGCAGCAACTGCCACAACATCATCCTCCACCAGCTCCaggagatgttcaacaagaCCCCCAGTGTGGTGCAGCTACTACAGGTGCTGTCAGACACACAGGCCCCTTTGAATGCTATCAACAAACTGCCAACTGTGCCCATGCTGGGTCTGACCCAGAGGACCAACACAGCCTACCAGTGCTTTTCCATCCTACCACAGTCCCCCACCCACATCCGTCTGGCCTTCCGCAACATGTACTGCATCGACATCTACTGCCGCAGTCGAGGCGTGGTGGCCATTCGCGATGGTGCCTACAGCCTCTTTGATAACACCAAGATCGTAGAAGGCTTCTATCCAGCTCCTGGACTAAAAACCTTCTTGAACATGTTTGTGGACAGCAACCAGGATGCACGGCGGCGTTCAGTCAACGAGGACGACAATCCTCCCTCTCCAGTGGGTGTGGACGTCATGGACACACTCATGCCCCACATGCAACCTCAACAGACAATCAGAGGCCAAGGGGCCTACCCACCCCTCACTTCTCCAAACAACCCCTACCACAGCAGTGTGGCCCCATCACCCTCCATGATGCCAACGCATTCACCGGGGAACATCCATGCAGCCAATTCCCCTAGTGGAGCTCTGCGGGCGCCCTCGCCCTTCGGGCCCACTCCGTCTCCCTCCTCTTTGGGCATTTCTATGGGCCAGACCTCCAACTTTGCCAGCCCACATGGAGCTTTGGACCCCAGTTCCCCATACCCCATGGTGTCGCCCAGTCAGAGGACCGGTACATGGCCTAGCTCTCCACAAGTCTCGGGCCCCTCCCCACGCGTACACGGCATGTCACCGGGTAACCCTTCTCTCCACTCGCCCATTCCAGATGCCTCGCACTCTCCTCGTGCTGGGACCAGTTCCCAAGTGATGCCTACCAGCATGCCTCCACCTCGTAAGCTACCTCAGCGCTCGTGGGCGGCCTCCATCCCCACCATCCTCACCCACAATGCCTTGCATGTGCTACTGCTGCCCTCTCCCACCATGTGCCTGGTGCCAGGGCTGGCTGGTAGTTACCTGTGTTCGCCACTTGAGCGCTTCCTGGGCTCGGTTATCATGAGAAGGCATCTGCAGAGAATCATCCAGCTGGAACCTAATCTCACTATTGTGAACTCCAATGAGCCAGGAGTCATCATGTTTAAGACAGAGGTGCTGAAATGTCGAGTGGCTCTGAACCCAAAGAGCTACCAGACTCTGCAGCTGAAAGTCACACCGGAGAACACTGGTCCTTGGTTACAAGATGAACTGCAAGTTTTGGAGAAGTTCTTTGAGACCAGGGTTGCAGGTCCACCCTTTAAGTACAACACTCTAAACGCCTTTACAAAACTGCTGGGGGCTCCCACCAACATCCTCAGAGACTGTGTTCGAATTATGAAGCTTGAGCTGTTCCCCGACCAAGCGGGCCAACTAAAGTGGAATGTGCAGTTCTGTCTGACTATCCCACCCAGCGCTCCGCCCATCGCTCCTCCAGGAACTATCGCTGTAGTGCTCAAGACcaaaatgcttttctttCTCCAGCTGACCCAGAGAGTGCAGGTGCCTCAGGAGCCCATCAGCATCATTGTGCCCATCGTGTACGACATGGCCACAGGGCTGACGCAGCAGGCTGACATCCCGCGACAGCACAGCTCCTCTGGAGCTGCTGCCCTCATGGTCAGCACCATCCTCAGGAGGTTTAATGAGCACCACCCAGCTCGACCAGGAGAATGTACAATATTTGCTTCTGTGCATGAACTCATGGCTAATCTGATGCTGAACCCTGGTGCACGCCCCTAAGAGTCCCCAGTCCAGCTTCTCCAGACCAAACTGAGAACACACTGAGTATTGGCATGCTGTATGGAGATCCAGGCTCTCACATACAGCCACAGAAATTTTCTCCAGGTGGACAAAATTCTGTcataaaggaaagaaaaagttaTGATGGAATGGAATATTCTTTGATTTTGCTTCATATCAAGAGTATATGTAAATGAATGAAGGACAGTGCATCTGTGAATGTGCCATGCATACTTCTATAAATTCAGGACATGATTAAGGAAAAAggacaatttatttttgtttgatgcACTTCTTAAATAAAGGtttgaaattagaaaaaaaaggtttgtttaccCTCAAGTGTAAatgctttttatatattattttaatgtctgcctttaagaaaaatgtgttttgcaaaaaagcttaattcattttgttttataatgcAAGCTATCAATATTGTGTTGATACTGgggctgtatttttttttttgatgacacTATTTAatgtatgtcttttttttttttttttttactggcaaATCTTTGACCACTCTCATTATAGCGGTCACTCTAAACACTGTATAGACTGTAACAAACTTTCAGAAGAAGCCCTATTTTTGATGACTGCATTTGAATCTTGATGGTAGCCCATACCTCTgtctttattactgtttaataaatatttgaaagtGTTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15156 MED14, RGR1; mediator of RNA polymerase II transcription subunit 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578237.1 lncRNA downstream 184928 14341038 ~ 14353940 (-) True LOC117597393
TU97953 lncRNA downstream 243058 14293937 ~ 14295810 (-) True G82604
XR_004578251.1 lncRNA downstream 587035 13945298 ~ 13951833 (-) False LOC113526223
XR_004578250.1 lncRNA downstream 587036 13943807 ~ 13951832 (-) True LOC113526223
XR_003402750.2 lncRNA downstream 619662 13917103 ~ 13919206 (-) True LOC113526249
TU98125 lncRNA upstream 48250 14601745 ~ 14605015 (-) True G82756
TU98126 lncRNA upstream 120713 14674208 ~ 14729951 (-) True G82757
TU98129 lncRNA upstream 159087 14712582 ~ 14737784 (-) True G82758
TU98131 lncRNA upstream 174362 14727857 ~ 14792165 (-) True G82759
TU98251 lncRNA upstream 366254 14919749 ~ 14920280 (-) True G82849
XM_026912499.2 mRNA downstream 1677 14534411 ~ 14537191 (-) False si:ch211-218d20.15
XM_026912498.2 mRNA downstream 1677 14534411 ~ 14537191 (-) True si:ch211-218d20.15
XM_026912496.2 mRNA downstream 4654 14514548 ~ 14534214 (-) True si:ch211-269e2.1
XM_026946101.2 mRNA downstream 107443 14422550 ~ 14431425 (-) True shox
XM_026913166.2 mRNA downstream 257232 14271488 ~ 14281636 (-) False tfdp1a
XM_026913021.2 mRNA upstream 38222 14591717 ~ 14594494 (-) True rpl8
XM_026912841.2 mRNA upstream 65527 14619022 ~ 14759714 (-) False caska
XM_026912840.2 mRNA upstream 65527 14619022 ~ 14759714 (-) False caska
XM_026912836.2 mRNA upstream 65527 14619022 ~ 14759714 (-) True caska
XM_026912842.2 mRNA upstream 65527 14619022 ~ 14759713 (-) False caska
TU96948 other downstream 1810843 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1822199 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 3503307 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 3567711 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3929826 10608313 ~ 10609042 (-) False LOC113526229
TU98227 other upstream 274291 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 509930 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 1666469 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 2474812 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4927625 19481120 ~ 19487739 (-) True grb14

Expression Profile