RNA id: XM_026925290.2


Basic Information

Item Value
RNA id XM_026925290.2
length 10203
RNA type mRNA
GC content 0.47
exon number 49
gene id cacna1db
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20785934 ~ 20902575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCAGAGCGCGCAGAGCGACAGGTCACGCCAAGAGCTCAGCTGATAAAACCGGAGCTCACAAGGAAGTTTAGAACATTTTGAAGGACATGTTGCACTGGAGGAAGAATGGAGCTCGCCAAAGGTGACAACCGCGAGAGGATGCTTCTGCTTGGTTTGGCCTCGAACCCCAATCACGAGCTTCATGACCTCCGGCGCAAGGGGAAGATTGTCTTTCAGAAGACGCTCGGACGATGTTTAAACGGTACcaacagagGGGCAAGCTATGCTATCAGCACACGGGCCCCTTCCTCTGGCGACGCTCCTCCCCTTTGGTCAGACAGCCCCTCCCTCTCCAGACAGTCACTCCCCCAGTCTGGCGCTCTGTCCTGGCAAGCTGCGATCACTGCGGCGAGAAACGCCAAGGCCGATGGCACCCAGACCATAAGTACATCGGACAGCGCTCCAGTAGGCTCTCTGTCGCAAAGGAAGAGGCAGCAGTATGCCAAGAGCAAGAAGCAGGGTAGCGCCACCAATAGCAGGCCTCCGCGGGCACTCTTCTGCCTCACCCTCAACAACCCGATACGCAGGGCCTGCATCAGCCTGGTGGAGTGGAAACCCTTTGATATCTTTATATTGCTGTCTATTTTTGCCAACTGCGTGGCCTTAGCTGTTTACATCCCCTTCCCTGAAGACGATTCCAATTCAACCAATCATGACCTGGAGACAGTAGAATATGCCTTCCTGATCATTTTTACTATTGAGACCTTTCTGAAGATCATAGCCTACGGACTGGTAATGCACCAGAACTCCTACGTTAGAAACGGCTGGAACATGCTGGATTTCATTATAGTTATAGTGGGgctgtTCAGCGTGGTTCTGGAGCTGATGACCAAAGAGGGAGATTCAGGTCAGTCCGGAGGGAAGCCGGGTGGCTTTGATGTCAAAGCTCTGCGAGCGTTCCGCGTGCTCCGACCACTCCGGCTCGTCTCAGGAGTGCCCAGTTTACAGGTTGTGCTGAACTCCATTATTAAAGCCATGGTTCCTCTGCTGCACATTGCTCTGCTCGTGCTCTTCGTTATCATTATCTATGCCATCATTGGTCTGGAGCTCTTCATTGGGAAGATGCACGCAACCTGTTACATGAATGGCACACGGACATTAGCAGAGGAAGAGCCTACCCCCTGCACTCTGTCAGGTCATGGACGCCACTGTTCTGTTAACGGCAGCACGTGTAGAGACGGCTGGCAGGGGCCCAACAATGGCATCACCAACTTTGACAACTTCCTGTTCGCAATGCTGACTGTGTTCCAGTGCATCACCATGGAGGGCTGGACGGAAGTGCTGTATTGGATGAATGATGCCATGGGTTTTGAGCTGCCATGGGTCTACTTCGTCAGTCTGGTCATCTTTGGTTCTTTCTTCGTCCTCAATCTCGTTTTGGGTGTTCTTAGTGGAGAGTTCTCTAAGGAGCGTGAGAAAGCTAAGGCACGTGGAGATTTCCAGAAGCTGCGAGAGAAGCAGCAGCTGGAGGAGGACCTGAAAGGCTACCTGGACTGGATCACTCAGGCAGAGGATATTGACCCAGAGAATGATGAGGATGGAGACCAAGAGGGAAAACGCAACcGGGTGACGATGGCCGATCTCACCCAGGAGAAGAAGGCAGGGAAGTCGGGCTGGTTCAGTCAGTCCACAGAGACTCAGGCGAGTATGCCAACCAGTGAGACTGAGTCTGTTAACACAGACAGTCCAAATGGAGACGACGACAAGATCTGCTGTTGTGGACCAGTCTGTCAAAAAATTACTAAGTCAAAGTTCAGGTCAGTAAACAACCGTAGCTGGCGACGCTGGAACAGATTCTGTCGCAGGAAGTGCAGAGCAGCGGTGAAATCTACCACTTTCTACTGGCTGGTCATTGTCCTGGTGTTCCTTAACACTCTCACCATATCCTCTGAACACTACAACCAACCTGTCTGGCTCACTGAAGTACAAGATGTAGCCAACAAGGTGCTGCTGGCCATGTTCACCTGTGAGATGCTGATTAAGATGTACAGCCTGGGCCTGCAGGCGTATTTCGTGTCTCTGTTCAACCGCTTCGACTGTTTTGTGGTGTGCGGCGGcattgtggagaccatcctcgtAGAGCTGGAGATCATGTCGCCTCTCGGCATCTCCGTGTTCCGTTGCGTCCGTCTGCTCCGCATCTTTAAAGTCACCCGtcACTGGGCATCTCTGAGTAACTTAGTTGCCTCTCTGCTGAACTCCATGAAGTCCATTGCCTCCTTGTTACTGCtgctcttcctcttcatcatcatcttcagccTGCTGGGAATGCAGCTCTTTGGCGGCAAATTCAACTTTGATGAAACCGTGACCAAAAGGAGCACCTTTGACAACTTCCCTCAGGCCTTGCTCACTGtctttcagatcCTGACAGGTGAGGACTGGAACACAGTGATGTATGATGGGATCATGGCATATGGAGGCCCTTCATCTTCAGGCATGATGGTGTGCATCTACTTCATCATTCTTTTCATCTGTGGAAACTACATCCTTCTGAATGTATTCTTGGCCATTGCCGTGGACAACCTGGCAGATGCGGAGAGCCTGAACTCGGCACAGAAAGAGCAAGAGGAGGAGaacaagaggaagaagagagccAGGAAAGGTAGCATAGACAAGAAAGAAGAGGATAAAGGAGGTGAAGATGGCGAAACTAAGGGTGCATTAGAGGAGGACACGGGGGATGAGGAAAGAGAGGCAGTTAATTCTACAGATGTGGATGATGACCCAGATGTTCCATCAGAACCCCGTCCTCAGAGGCTGTCGGACTTTAGCCTCAAGGAGAAGATTCCACCCATTCCAGAGGGCAGCgctttcttcatcttcagccaCACAAATCCGTTCCGTGTGGGCTGCTATCGTCTGATCAACCACCAGATCTTCACCAACATTACCCTTGTCTTCATCATGCTTAGCTCCTTCTCGCTGGCAGCCGAGGACCCCATTCGGAACCTCTCAGCACGGAACATCATTCTTGGTTATTTTGACTATGCCTTCACAGCTATCTTTACAGTAGAGATCCTACTGAAGATGACCGCCTATGGCGCATTCCTGCACAAAGGCGCATTCTGCAGAAACTACTTCAACCTGCTGGACTTGCTAGTTGTTGGAGTCTCTTTGGTGTCCTTTGGCATACAGTCCTCAGCCATCTCCGTTGTAAAGATTCTAAGAGTACTGCGAGTGCTTCGTCCTCTTAGAGCCATCAACAGGGCCAAAGGACTGAAACATGtcgtgcagtgtgtgtttgtggccaTCAGAACCATCGGCAACATCATGATCGTCACCACTCTGCTACAGTTCATGTTCGCCTGTATTGGGGTGCAGCTCTTCAAGGGGAAGTTTTACCGCTGTACAGACGAAGCCAAGTTGAGTAAAGAAGAATGCAAGGggacatacatactgtataatattggTGATAACGCATTGCCACAAGTGCGAGAGAGGAAGTGGTTCAACAGTGACTTCAACTTTGACAACGTTCTGAATGCTATGATGGCTCTCTTCACTGTGTCAACCTTTGAGGGCTGGCCAGCCCTCTTATACAAGGCTATAGACTCAAACCAAGAAAACATGGGGCCTATCTACAATTACCGCATCGAGATCtccatcttcttcatcatctacatcatcatcatcgccttCTTTATGATGAACATCTTCGTGGGTTTTGTCATCGTCACTTTCCAGGAGCAAGGAGAGAAGGAGTACAAGAACTGTGAGCTGGACAAAAACCAGCGTCAGTGTGTGGAGTATGCTTTGAAAGCTCGTCCATTGCGGAGATACATTCCAAAGAACCACTACCAGTATAAGTTCTGGTATGTGGTAAATTCCACTGGTTTTGAATATGTCATGTTCATTCTCATTATCCTCAACACACTCTGTCTGGCCGTACAGCATCATGGCCAGTCTGATCACTTTAATTATGCTATGGACATTCTCAACATGATGTTCACAGGAGTCTTCACAGTGGAAATGATTCTTAAACTCATCGCCTTCAAACCCAGGCACTATTTTACCGATGCATGGAACACGTTTGATGCCTTAATTGTTGTTGGTAGCGTCGTTGACATTGCAATCACAGAGATCAATCAGACTGAAGCTCCAGTAGTGGCAGAGGAGCGAGGGAACACAGAGGATAGCGGACGAATTTCCATCACATTCTTTCGTCTGTTTCGAGTCATGCGTTTGGTCAAGCTGCTGAGCAGAGGAGAGGGCATTCGGACACTACTCTGGACTTTCATCAAGTCATTTCAGGCTCTGCCGTATGTCGCTTTGCTGATAGCCATGCTCTTCTTCATCTACGCAGTAATCGGGATGCAGGTGTTCGGGAAGATTGCGATGGTGGATGGCACACACATTAATCGCAACAACAACTTCCAGACTTTTCCACAAGCTGTACTCCTGCTGTTTAGgTGTGCCACAGGAGAGGCTTGGCAGGAGATCATGCTAGCATGTATGCCTGGTAAACTGTGTGACTCTGAATCTGAAATCACCCCTGGAGAGGAGAAATCGTGTGGCAGTGGTTTTGCAATCATCTACTTCATCAGCTTCTACATGCTCTGTGCTTTTCTGATCATCAATTTGTTTGTGGCTGTCATTATGGACAATTTTGACTATCTGACACGCGACTGGTCAATCCTTGGACCGCATCACTTGGATGAATTCAAGAGGATTTGGTCTGAATATGACCCAGAGGCAAAAGGGAGGATTAAACACTTGGATGTTGTGACATTGTTGCGTAGGATTCAGCCACCACTGGGCTTTGGTAAACTCTGTCCCCATAGGGTGGCATGTAAGAGGCTGGTTGCCATGAACATGCCTCTAAACAGCGACGGTACTGTCATGTTTAATGCCACCCTTTTTGCTCTGGTCAGAACGGCTCTGAAGATCAAAACTGAAGGAAATTTGGAACAGGCCAATGAGGAACTGAGGGCCGTCATCAAGAAGATCTGGAAGAGAACTAGTTCAAAGCTCCTTGATCAAGTGGTACCACCTGCAGGAGATGACGAGGTCACAGTGGGGAAGTTCTATGCCACTTTCCTGATTCAGGACTACTTTAGGAAATTCAAGAAGCGCAAAGAGCTAGGTCTTGTGGGACGGCACCCTGCCAGTCATAACACCGCCATTGCACTACAGGCTGGTCTCCGGACACTGCATGACATAGGCCCTGAGATTCGCAGAGCCATATCATGTGACCTACAAGATGAAGACCTGGTAGACTTTAACCctgatgaagaagaagacatATATCGGAGAAATGGTGGCCTCTTTGGAAACCATGTCAATCATGTCAACGGGGATCACAGAGGCTCGTCCACCTCCACTAACGTCACCCAGAGACCCCTCCACGTTCCACCCCTTCCCTTCTACGTGCAAGTTGAGCCTCCTCCACAGCCCCTTTACGCCCAAAATCGTCCGTATTCAAACCCCAACTTGTACTTCAAGTCCCCTAAGTCCTCGAACTCCAACCTCAACAATGCCAATGTGCCATGCATGCCTGTCCTGACCAACGGAGGGCAGTACCGCCCTCACACAGATCGGCCCACCAGAAGCCGGGTGTCTTCCCTGGGTTCCTACCTCAACCTCAGGAGTGATTCAGAATCACAGCGAAAGTCTCATTTTAAGAGACCACGATACTATGAGACCTATATTAGGTCAGACTCAACAGCTGGTTTTTACCCCACCATCTGCCGACAAGCCTCCCTCCACGGTGATGTCAGCGACGATGACAGAGCTTCAGTGGAGTATTACAGTGGGGAGGAGTTTCAGGAGGAGGACCTCATGCTGGCTGGAGACAGGAAGTCATACAGAGAGTATCAGGACACAGTGAGCAGTTTGGAGTCAAACCCACCTCATGAGAACCAAGACCCTGAGTGTTTCTATGACGATGATGAGCAGCCCATTTGCCAGGAACTTAGGAAATCGCCAATGAGAAGGCTTCTGCCCTCAACACCTCAGGCTCCTCATAGACCTTCCTTCAACTTTGAGTGTCTGTGCAGACAGAGAAGCCAGGATGAGACTCCTCATTCTCCTTCCTTTCATCAGCACACTGCTCTACCTCTGCAACTAATGCAGCATCAGATTCCACCCACCTACAGCAGTCAGTATCTGCAGCAGAGAGGCAGTGCTCATAGTCTGGTGGAGGCAGTGTTGATATCGGAGGGACTGGGAAAATATGCAAAGGACCCAAATTTTGTGGCAGCAGCCAAACACGAGATCGCAGATGCATGCGAGATGACTATTGATGAAATGGAAAGCGCAGCAAGCAACTTGCTAAATGGAAGTCTGGGCAATAGCATGGGATCAGATGGCACTGGCACGCCCCAGAGCATCATAGGCCACAGTCTCCACAACTACAGCGATGAGGAGACAGAGCCAAACAGTAAATACGAGGAGGACCTCACAGACGAAATTATATGCATCTCAAATTTATAGCATTtgctaaaaatgaacaaacagatgAAAGGAGAAATAGTGCCTTCTAGGGGAGTGGAGACAAACAACTCTCTGGGCCGATCAACCAAGCAAAATCCTATCCCATTCTACAGCTGTCACCTAACTGGGACATGGGCTTGCTGCAGAAAAAATTAGACACAAGAAATGTGAGCTCtcaactgtatgtatgtgtgtgtgcatgtgtgtgtttctcaacAGCTTTTTACAAgaatatttttccacattctttacatatcaaccaaaaaaaaaataaatttttgcaGTCATATCCCTCTCCATTGCCTTACCCACATATACAAAAGCTAGTAATTAGCTTCAATACACTGCCATTCATTGTCCATTCCCAGTGTCACTCAAAATGAGTCAACAAAACAGCCAGATAAAACTGTTAAGCAATATCACCCCGTAACAATATTATCACActtgaaaaacacatttttactgcGCATGTATAAGGGAGAATCTGACAACACAGCATAAAGTCTAAGCAAGTTTCTCCCTGTAATTACACACTATGttatataataaagaaaaaaatattttagcacaAACACAGTAATATTACACCCAGAACTAAAAGGATTTATGAATAACATTTCAGTCTAGCCATTGTTTGAGCCAGTGTGAATGCAAAATGCACACAATATGCATAAGATCCACTCTGTCCTTCTAATATGATACCTTTCAAAATCGGCATGCATGTACACATAACCTGGAGGCAGAGTAAATctgcacaaaacatttttctctgcAAAGTTCTTTTAATCGGTTTAGGACTAAGTAGAGAAgtcccactgtatatatatatatatatattggtacATTTTGGAAGTTAGTCACATTAGAAGGTGCGTTTCTGTGCATATCGTGTGCATAAGTACATAATAGATTTATGCGTTACCAATGCTGCTTTACAAGACATTTTGTACCATTGAGTGACATTCAAAtaccatttattttcacaaacatGTTTATGTAGTATACACCATGTTTTCATGCTTTATACCTTTAagattctgttttatttttgcatggttttgaagaatgtgtgtgaaagctcCTGCTGtcctcatcacacactcctactCCTCAGGTGACCAGTCATGTGAAGTACTACCTACACACATCTGCACTACCCAAGAGCTGCTAACTCCACACTGCACCTCTGCTACCTCTACCAGTCAGGCTCTAATGTAATGTCAGCATGTTCCCTTAGGGACCAAAGACATTGGGATGGGGAGTGAAAGTTTTTGCCCTTTTTCAGATTGTCAAAACAACTGTCACAATGCATGAGTGTATCATACTGTCATTTACAAGCTGCTTTCTGATTAGGCTGTCCAGATGAACAGGGTCTATAATTCACACAAAACTGAATCCAGGAATAAATTAAAGCTAGCGTGGGCCAGCTAGAATGTTCTTATTAGCATAACACTAACCAGCGTCTATTAATGTCTCATAATGTTAAGTCTAGACAGCTGGACTTACGGTGTGACCACAGGCTCTTTTTGCCTCTTTGTCAGTTCTAAATGTCACTTGGACAGCTCAAAACCTTCACAGAGGATTATCTAATAACTTGCAGTCATTGTTTACAGTATAgcattttgagaaattaaaCAGTTCTCAACCCTTCAAGTAATGCCATCCAATCCAATGAAAGTCTCTTAACAAAATAATAGATGTAAATTATGGTTAAATTATTTGCCAACCTATTGAATGTGTCCAGTTATTTGAAGCCACATTCTGTTTCACCTCTCCTAACTGCCAGGTGCAGGGAGAATCACTTGGGCACCTTCTTGTGAGTGACATTCAAGGGACATGTTagcaataaatatcactgtcaTATGGCCATATTTCCCTTTCTGCTCACCTTGTACACATGGTGGACCAAATGTACATCATATAGAGCCATACAGGTTTTCTATCCTCTAAAGCTGGGGATAGTCTCTTTTTTGTTCTGCCTTGGTGAGTGTAATTTCTTTATGCATTCCCACCACCCTTTTTTCCCCATAGAATGCCACAGAACCCTTGTTCTCTTCACTTGGGCTGTACTACCCCATTTTTTTTAGCCTTTAGGAGCCATGCTGCAAGACTCACACTTGTGCAGCTGGTGTCTGAATAGTTTGGAAGCTCAAGACTGGAACCAGCTATGTGCTCACTGCCTCACTgttggaaatctaaaatacaGGTTCTGACTCTCACATGCCCTGAATGGTGAAGCCAGTGCTTATACAGTGCAGTTAACTGGACCATACAGTTGAACCTCCATGTTAAACCCGAGGCTGAGTCACATCTGAAAATAGGTCTGGGTCGGTCCCTGCTAGCTTGCAGGAACCAGAAACAGGCAGCCACTCATAAACTGGTGGTGGCTTTGAGTTGCCCGAGTTGGATGAGATAGTGCTAGGCAAGCCGCAGGACCCGGTGCGCGCGTTCGCACAACACAGTTAAATTCGCTATGCCACAGTGCAAAGTTTTGGTTGAGTTTTAAAGAGGGATTTGGACAGATAGCTCACCCACGCCCATACTGTTGTGTGCGTTCTAAGAAATATAATAGATCCCAAGCAGGTCGGACTGTAACATACTGCTGATGCCTGGATGCATGCACAAAGTACTACATACAGATACCCACTGCTGAATGCCAGTGCACTCATGGCATACATTGCATCACCTGTGGCATGCACTGGAAATATATTAGTTGTCTTACTGTTAGGATTGGTGCAATCACTCCAATCTACAGAAATGGATCCAGAAAGTGAGGGAACTGATTGATTGACTCCTAAGATGGGACATCCAGGCTAAGATATGGGGCCAACCTGGTTTATGCACGGCTTCAAGTGTAGTTAACACAGTCCTTCGCTTGACATGCAAATGTATCCTGTGTACCAGGTTGTACTTTAAGCATGTAGCCCTGGGTAAGGAGAGCGCAGGTTTCGGAATTACTGCTGTCCAGTCACCGCATCCTGGCTCTGTATACCAACACCCACAAGGGTTCCATTGGCCTTACTCAAGCCTTATGCAGGTCATGCCCTCAGGCCCCAAGCAGGTGTTTGAGTGCCTCCCATCCATCTTGGTGGATAGGCCCTAAACAGATGCCTATCCTACTAGAGTCCACAAGGGTGGGTAGTGACAGGAACATTTTACAGCCAGAAACATTGCTTATTGGGCAGTGAGAGCACATCAGATCAGTGTCGCAGGGGTGCAAACTCCCCCTGACCCGAACATTTTTGAGCCATTGGGCTCCATCAATATCAGATCCCAAAAAAGTTTTTGCACTGACCCAAGAATTTCTTTCTCTCAGGAAAGAGGCATGACCAAAAAAGTAGATCCTGCAGTTCAGACAATAAGTTTTAATCAACTTACTTCTTTCATCAGAAGGATGGTGGTTTTCAACAAATTGTATGTGTGAGAAGTCTAAATTGGTTCTTCTGCTAAGAGCCTGTGTGATGTTAATTTTCATGCCCCAGAAAACAGGTGCTTTATAAGGTTTGCCTTCTTAGAACACAGATCTTGTATGCCCTTAGATAGAAGCTTTTCCGTGAATGGTGTTAACCCTATAGACTGGATCCCTTGCGTTGCCTGGATCCCACTTTTCTTTATACACAGCAAGAACAACCCATGTATGCTAAAGGTGTATGTGGCTGCCATCTCACCTTTAAGGCCATCCTTATGAAACTTTGCAAGATGCCAAACTGAAATGAGCATCTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160442 lncRNA downstream 478204 20239778 ~ 20307730 (-) True G135854
XR_004578538.1 lncRNA downstream 511958 20271589 ~ 20273976 (-) False LOC117597783
XR_004578537.1 lncRNA downstream 512754 20271589 ~ 20273180 (-) True LOC117597783
TU160419 lncRNA downstream 599533 20185255 ~ 20186401 (-) True G135832
TU160222 lncRNA downstream 771131 20014574 ~ 20014803 (-) True G135644
TU160834 lncRNA upstream 5493 20908068 ~ 20910023 (-) True G136198
TU160842 lncRNA upstream 34546 20937121 ~ 20938161 (-) False gnb1a
TU160849 lncRNA upstream 52707 20955282 ~ 20955845 (-) True G136212
XR_004578551.1 lncRNA upstream 306621 21209196 ~ 21225505 (-) True LOC117597792
TU161266 lncRNA upstream 444502 21347077 ~ 21347279 (-) True G136564
XM_026925242.2 mRNA downstream 18454 20757716 ~ 20767480 (-) True LOC113533248
XM_034306775.1 mRNA downstream 81370 20508726 ~ 20704564 (-) False cacna2d3a
XM_026925413.2 mRNA downstream 81370 20508726 ~ 20704564 (-) True cacna2d3a
XM_026925088.2 mRNA downstream 609813 20171393 ~ 20176121 (-) True slc25a27
XM_026925391.2 mRNA downstream 780544 19973564 ~ 20005390 (-) True LOC113533329
XM_026925261.2 mRNA upstream 34544 20937119 ~ 20965492 (-) True gnb1a
XM_026925149.2 mRNA upstream 72709 20975284 ~ 21028944 (-) False cfap74
XM_026925148.2 mRNA upstream 72709 20975284 ~ 21028944 (-) True cfap74
XM_026925421.2 mRNA upstream 288013 21190588 ~ 21192119 (-) True LOC113533345
XM_026925060.2 mRNA upstream 412575 21315150 ~ 21333205 (-) True LOC113533153
TU160447 other downstream 512736 20271650 ~ 20273198 (-) False LOC117597783
trnat-cgu_2 other downstream 744983 20040880 ~ 20040951 (-) True trnat-cgu_2
TU160320 other downstream 745246 20040297 ~ 20040688 (-) True G135737
TU160210 other downstream 792190 19990863 ~ 19993744 (-) False LOC113533329
TU159181 other downstream 2523978 18259585 ~ 18261956 (-) False dynll1
TU160844 other upstream 42100 20944675 ~ 20965470 (-) False gnb1a
TU161272 other upstream 454153 21356728 ~ 21361844 (-) True G136569
XR_004578618.1 other upstream 5405513 26308088 ~ 26313982 (-) False LOC113546035
TU165388 other upstream 6196694 27099269 ~ 27158050 (-) True G140026
XR_004578589.1 other upstream 6204323 27106898 ~ 27115874 (-) False rassf2a

Expression Profile