RNA id: XM_026937756.2


Basic Information

Item Value
RNA id XM_026937756.2
length 1293
RNA type mRNA
GC content 0.44
exon number 7
gene id psmf1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5982584 ~ 5989372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCTAACGGACTACTGTTGGACCggtagccaaaaaaaaaaaacaaaaacagttttgttttcGTTTTCCCTGAAGTGTGCAAAGCCATGGCGGGACTCGAGCTGTTATATACTTGTGTGTCGAGTTCTATAACCTCTCCTCAAGATGCGGTTGTGTGTTTTATCCACTGGGAAATAGTGAAGAGTGGATATAAATGTTTAGGAACCGGAGATGAGCCTCAAAATGGAGAGAAGAAATCAGAGTTGCTTCCTGCATCCTGGAACACAAACAAGGAGCTGTACACACTGAGATACAGATCAAATGATGACAAGTACAACCTGCTCCTCAAAGCCATCACAGTTGATTCCAGCTTGATTTTCAACTTAATGGATTCAGCCACAGACAAAGTCACAGACCTGACTGTTAATGTTAGTGATTATGTAAATGAAGCAAACCTACAGTCATTTGAAAGTGTGTACAAGAACACAGAAGATTTGGTTAAGAGGCTGAAGACATCACTACTACCTGCAGTGAAAGAAGAGGGAAGTGCgaggaaagaaaggagagagagattcacagacacacagcccCAGCCAGACCATGATCCCCTGTCCATACCTACCAGAGGTCCCCCTGCTTCGTACCCCCCAAACTGGACAGACCCACTGAATCCATTTGCTGCAGGGAGAGCTGATCTTGATCCCTTCAGTGGGACAGCAGAAGGCATGATTGTGGATCCATTACGAGCAGGCTTCCCACGTTCTGGCTTTGACCCTTCAAGTGGCATACCTGGAGTCCTCCCTCCAGGTGCTGTGCCCCCTGGTGCCCGCTTTGACCCTTTTGGACCAGTTGGCAGACACAGAGCTGGGCCAGACCCTGATCACCTCCCCCGGCCAGGCTATGATGACATGTTCATGTAGAAGATTATAATTCACATCCTGGTTCTCCTGGAAGACTGCCTGTTCCCTTAATGTACTACatttctcatctctctgctttgCAGTGAACAAAGGACAACAACTTCATGTCTTGCTACATTTAGGTTTTGCTGGATTGATCGCTACTCAATTCGAAAGTGGGTTAATGCcttcatttttacaaaatttcgAAATTCAGTAAAACTGATGAAGCCCTTTGAGTGATATTTATTCAGCTCACCAATCACAACTTAAGTTTCTACCTAAAATTAGTTCATGTTTACAGTTTGACATGTATAAATGGACGACAGACTCTCAATAAGAGGTCTtatgacctctcattaaatatgTGTAGAGATATTactaagaaaaataaagcttggaaagaagagatca

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26607 lncRNA downstream 17401 5956639 ~ 5965183 (-) True blcap
TU26606 lncRNA downstream 17401 5957026 ~ 5965183 (-) False blcap
TU26608 lncRNA downstream 17401 5957026 ~ 5965183 (-) False blcap
XR_004577038.1 lncRNA downstream 91752 5889282 ~ 5890832 (-) True LOC117595835
TU26515 lncRNA downstream 111883 5870500 ~ 5870701 (-) True G22237
TU26629 lncRNA upstream 598 5989970 ~ 5990195 (-) True G22345
TU26653 lncRNA upstream 53744 6043116 ~ 6043752 (-) True G22367
TU26760 lncRNA upstream 159574 6148946 ~ 6149167 (-) True G22470
TU26749 lncRNA upstream 215912 6205284 ~ 6208654 (-) True LOC113546630
TU26768 lncRNA upstream 240388 6229760 ~ 6229969 (-) True G22478
XM_034300835.1 mRNA downstream 17441 5957016 ~ 5965143 (-) False blcap
XM_026920539.2 mRNA downstream 17448 5957016 ~ 5965136 (-) False blcap
XM_026919444.2 mRNA downstream 119151 5761737 ~ 5863433 (-) False chd6
XM_026919428.2 mRNA downstream 119151 5761737 ~ 5863433 (-) True chd6
XM_026919418.2 mRNA downstream 119151 5761737 ~ 5863433 (-) False chd6
XM_026927486.2 mRNA upstream 66450 6055822 ~ 6118568 (-) True rims4
XM_034300540.1 mRNA upstream 84663 6074035 ~ 6076877 (-) True LOC117596222
XM_034312125.1 mRNA upstream 162029 6151401 ~ 6160674 (-) True LOC117599288
XM_026921377.2 mRNA upstream 191656 6181028 ~ 6195188 (-) True tomm34
XM_026921368.2 mRNA upstream 191656 6181028 ~ 6195182 (-) False tomm34
TU26421 other downstream 446524 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 446577 5534124 ~ 5536007 (-) False romo1
XR_003403149.2 other downstream 781372 5111462 ~ 5201212 (-) False LOC113530384
XR_004577391.1 other upstream 84663 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 490030 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2273247 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2491679 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2491679 8481051 ~ 8484181 (-) False tcta

Expression Profile