RNA id: XM_026932607.2


Basic Information

Item Value
RNA id XM_026932607.2
length 7368
RNA type mRNA
GC content 0.37
exon number 14
gene id slc6a6b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14765186 ~ 14789849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTCAATCAGGGCTTACTCTTAGCTGCACGCACATTTAGGCTGTGGCAGCAGAGGCATGGTGACAGCGGACAGAGAACAGCACACACCATTCTAACGCAGTCATGAAGGAGATCATGGCACAAAAAGAGAAACTTCAATGTCTGAAAGACTTCCATAAGGACACTCTGAAGCCATCCCCAGGGAAAAGTCCTGGTACCCGACCTGAGGATGAGGCTGAGGGCAAACATCCTCAGCGGGAGAAGTGGGCCAGCAAGCTCGACTTTCTTCTGTCTGTGGCTGGAGGCTTTGTTGGTTTAGGAAACGTCTGGCGTTTCCCATACCTCTGCTATAAGAATGGAGGAGGTGCATTTCTCATCCCATACTTCATTTTCCTGTTTGGTGGAGGCCTACCTGTGTTTTTCCTGGAGGTGGCTCTTGGCCAGTTCACCTCTCAGGGAGGAATCACTTGTTGGGAAAAAATCTGCCCCATTTTTACTGGTATCGGCTACGCTTCCATTGTGATCGTTTCCCTACTCAACATCTACTACATTGTGATTTTGGCTTGGGGCTTGTACTACCTGTTCCAGTCCTTCCGGCCTGAGCTTCCTTGGGCCAGCTGCAATAATGAGTGGAACACGGAACACTGTATAGAGGACACACTCCGCAAGAATATGAGCTTAGGGGGGCCTTCCAATACTACGAACTTCACGTCACCAGTCACTGAGTTCTGGGAGCACAACGTCCTCAGTATTTCTGATGGCATCGATAATGTGGGCCCTGTTAAATGGGACCTGGCTCTGTGTCTCCTTGCTATGTGGGTCATCTGTTTCTTCTGCATCTGGAAGGGTGTGAAGTCCACAGGAAAGGTTGTGTACATCACAGCAACCTTTCCATTTGTCATGCTGGCTGTGCTCCTGATCCGGGGTGTCACACTTCCTGGGGCAGCCGAGGGCATCAAATTCTATCTGTATCCAAATGTCACCCGTCTACAGGATCCTGAGGTTTGGATTGATGCAGGGACACAGATTTTCTTTTCCTACGCCATTTGTCTGGGAGCAATGACATCACTGGGGAGCTACAACAAGTACAAATACAACTGCTACAGGGACTGTTTGCTGCTGGGAGGCCTGAACAGCGCTACCAGTTTTGTGTCTGGCTTCGCAATATTTTCCATCCTGGGCTTCATGGCACAAGAGCAAGGGGTGGACATTGCCGATGTGGCAGAGTCAGGTCCTGGCTTGGCCTTCATTGCTTACCCTAAAGCTGTGACAATGATGCCTCTGCCTACATTTTGGGCCATTCTCTTCTTCATCATGCTTCTGCTACTAGGTCTCGACAGTCAGTTTGTTGAAGTGGAAGGACAGATCACTTCACTGGTGGATTTGTATCCATCCTTCCTACGGAAGGGTTACCGTCGAGAAATCTTCATAGCTATAATATGCTTTGTGAGCTACCTTCTGGGACTTACCATGGTCACTGAGgGTGGCATGTATGTGTTTCAACTCTTTGACTACTATGCAGCCAGTGGTGTGTGCCTTTTGTGGGTTGCATTCTTTGAATGCATTGCAGTAGCCTGGATTTATGGTGCTGATAATTTCTATGATGCAATTGAGGACATGATTGGATACAGACCAAATCCTTGGATGAAGTGGTGCTGGACTGCAATCACACCTTTGCTTTGtgtgggatgtttcattttctctttggTCAAATACAAGCCTCTGACGTACAACAAAATCTATGAGTATCCGGACTGGGCCATTGGTTTGGGATGGGCCCTCGCCCTCGCATCCATGGTTTGCATACCTATGGTAGTTGTGATCAAGATCATCCAGTCTGAAGGCCCTCTCATTGAGAGGATTAAAGCAGTGGCAGCTCCGGTGCGAGGCAGTACAAATTCATGTCCTCAGGAGTACCGACCGAAGGGCTCAGAAATGGCACATCCCCTTGACCCCAATGGGAACAACGGCTTGATCAAGCCCAGCCACACTATCGTAGAAACCATGATGTGAGCGCTCTCTGTGAGAGAATCCAATCACCTGCtttccattttatatatataaatacatatatattaaatacaatgTTGACACAGTCATAGGACCAGGTTTACATATCTGCACTAGAAgttctttcccttttctttttttttttttttttttatagaggaAGTCAcccttttttttgtcagtgtctacttttaatatttttatcataacattgttattttactgttataacTGTTGCTGTAATTAGATGAAAGATTGATTTCCATACACAAACACCAGTATCGAAATAgtcaaacatttcttttttcttttcttgttttttttcttttctgtaaataatgacgtttaaatgatttgttgttgGAGTGGACAAACAAGACCAATTAAGTGCTGCAAATGAGAAAAGTTTATAGTGTTCAAAAAGTAATATTAGTGTACCTAGACAAAAAGTGTCTTGTTGGACATTTTTTGGTAAGGCATCTGTGCATATCTAGACAGCAAGCGTAAAATTGAAACTAATTGGACATCTACACTCAAACATTACGTTCACAATGGAACAGAGACACTACGCTATTTTCTGGTGCAAGTTTAACACACTGAAACCACCACTGCACATGAGGAATGAGTTAACACATCGAAATTACTGTAAGCATCTTTGAAAGCACAAATGGTCACACTAATTCTTACCATACTGATCTAGTACAATAAGCTTTAACTTTTAACATCTCCACCATTTATTCTCAAGGgtctgtattcagagttgacaACTTAAGTCCAAGAGAGCCATCAATATTTACGATGGGAAGGTTAAGTACATCAGAAATGGGCTGCACAGGTTGATCTGCCTGCATGAAGTTCATATCTACGTGGTTGCAGGATTTTTTCAAAGCAGTAGCTTCTGAGACATGGTTTTTCAGTAGTGTCTAGACCGCCGACTTTAATCAGAAGAACTTGCATTTAAGCCTGAATTAAAACAAGGGTAGAAATTGCGCATTgaagaaatacatttaaaatgaaaaacaaaaagacgaATACCATGATATCTGAATGAGAAAAtataaagcactgaaataaatctaataggagtctagtatattggcaatatattatatataacaggATACTAGGAACAATCACTGTAAATTTTGTTTagtttaacaatatggctttcAACCTCATTATTCAGAAgcttataaaataacatttgatCCGGCAACTCCTATTATTttgtactttatatttttttatgttgtgcACATACAAATTGTGCATACAATTTAATGAAGACAGTTAAATAAAGCACAGCATGTATgactaattaaataatgtgaCTATTTTTGTTAATTCGATATGCTGTCCTATAAAAAcgttttaaaaaagtgaattttgttttttgggggtAATCATAGCCCAAAACACAAATTTCAATGTAACATCAAACTGTGTGGCAGTGGCCCtgacagtggcactggacttaatactgctgcTCACTCAAGCCGATATTGTACTTACAGTATATCCAAGGTTAAGAATCATGCGTAACCAAGACACACCACTGTTTTTGGTGAACTCCACCCCGCATGAGTAACTCTCACACCCATACTCAAATAGCATATTCGAGCATATTAATCTTGTGCATATTAGCATATTAATCTTGTGGTTATGTCTGTGTTCTGGACACCAGGATGCACAATTTTGGCATTAAATCCTCACTAAGCGTgtgtaactcaactctgaatacagcccaggTACAGCATATTTTTGCGTGGTTCTTAAATTGATGTAATTAAGCGCTCAAACAAATTCATTTCTACCCACATTTCAACACTCCCTAAATATCCCACAGTCAATTGTTTTTAACCAGCTTCATAAGAATGGATCAGGGCCTAGACacatactgatactggtatGTTCGAATTTGAAATTGCTCTTGTCCAAGCATTTGTGTCACACCAATACAAAGGTAGTATTTTATGGTCCAAGCTGTTTgtacatgtcattcttttattttcctttgcCTTTTGTATTCTTAATATTAAGATTGTACTTAGCTTCTGTcagcaattattatttttttataggaCAAAATTTTATATAGAGCTTTTAATCAGTGCAATTGGTGGCAATTGTATCGTGCAATACTTTGTAGAATGAAATGCATTGTTCCTGTCTTTTAAAAAGATGCTACTTGCAGTGAAATATCTTTATAACAAAATATCAGGCACAATTAATCATTGCAAGGTAACAccgaactaaaaaaaaaaattgtacttaCTGTGATACTTTtcatattttagtattttaaaaagaaattatattatttttctattggTTTATCTGTTAGATAACATACATTAAtcttaatgattaatgatttttaatagcCCAGTTTGGACTGATATATcatataattaacattaattactgCTTCTGAAAGCAGAACTGTGTTCAAACTAAACTATTTGCTTGCAAGCAAGCTGTAACTAGGTTTGAAAAGCTCTAGAATATTCCGTTTAGTCTCAGGTCTGATCCTAATGCAGAAACAGACTTGAGAGGTTTCTCTAAATCTTTTACACCTACATGGTTTGGCAAAGTGTCGGTGTTATTAattcatgaaaacatttttaaaaattctttttttaaattcttgatTAAAACATGGAAgcgaaaatgtatttaaaagttTTTGGAGTAcctaaaaactttttttttatttcttaataaacatttatttttgaaaaaaagaaaagaaaaagcctcCTGCTTTTGCTGAATATTGCCAGAACTAATTTCTTTCCAAAATTTGAGGTGAaatcaaatcattaaaattgtttGAATATAACTCAATCATACCTTTGGGTTCATGAAGGCTTTGGACTGACgcactaccacacacacactctttaattTAAGGTGACCCAACAACAATGCTGTTGCCAAGCCAGGGTATTTTAACACATGCCTGGCTTCCTAAAATATGGCTTGTGAGGACACAACCAGAAGTGCCATGTTAGGTAATGGAAACTTGGTCCCAGATAAAACTGAACATTGTATAAATGTGCATCTTCATTATGTTCACTGCGTTACTGTTTCAGGGGTCACTGAGAGTTGCACTGATCCTTTTCCCCAGCTGCTGCTGTAGTAGTGATCTTATTTGAAACAGACTGATAGCACCCAAGGGATGAGAAATCTGGAGAGTTTGCAAAATATCACAAAACTTCCCAAGCTTAACTTGCAGAAGGAAGAATCGTTTCTTTCTCAGGGTACATATGATTAATGAGTCGGATTCCCAACGGAGATGGAAATATCTGCTTTTTTATTATAAGGCCACGGAAATTATAACCATCCCATTGTGGCTTAGTCATTTTTCAATTCTTGTGCTAAAAAtaattgggattttttttttttttttaaattttattattattattattatttattcgaATTAATTTGTTCTAATTTGATTTAAAGCACACTGGGGTACATTTTGACCACTTCTGGACTAAAATATTAGTCTGTATCTATTCATTTGGCAAAATAGAATCCAGGCATATAGTTATGATATTGTATAATGTTCTCACTCAAGGGTTTGGACATGCCTcagatttaaactcacaaccttctgctTACTAGCAGGGCATGCCCACTGCCTATATGACAGTTTGGCTATTTTGgaaatcatttgttttaataaatgtggaTGATCTACCAAGTTAGACTGATGGCAACAGTAGTGATGTATTGGGTGTTGGATAGAGAGTTTAGTTTAGCAAATTAACTGTCTACAGTGTTTCAACGTGTGTGTAGAAACATCAGCACTACCCAGCCCTTTATtcctataccacagcactgttgaattcttgattctgattggtcataaagtgttgattaatttactcTATCAGCAATAGTGCAGtggcaaggtttatattaatgcacccaTTCTAATAGGCctacagtaacaacttacaaGGAACTTACTACACATAATAAAGTGAGGagatttctgtgaggagatgtttgtttaacatttttggaaggagtctccagtgtcagcactttgtgacagtcaaaaggaaagctgtaactttaaatttccagacagagaagctggtgaaggaattatagctactataatgtaagtgataagtggAAGTAACTTCTTTTATGGATAGTCCACAATATTTAAGTAACTGCGAATAGATACACGTtctttaaatactaaaataaaattgtaataattggcaaattgctgtggtgtaagaggaataaaataaaacacttcagaatgtgctggtataggaaagtaatccactttggggtggtaacagaaaCTGTGCTAAGATCACATCAACCCCTTGTTGATTGGTTTCCAGTGACAATCGTgtcacattttattccttactctgtaaatgttttacagatACACCACCACCATTTTCATTCCCCAATAAAGCACTGTGATAATGTGATCCAAGCAGCATCCAAGCAGCATCTTGATTCTCAGACGCTATAATCTTTGGTTTCTCAGAATAAGCATTACTGACTTGCATCAAATAATCAATATACCTGGCTTCTCTGTTTAGCATTGATTTCAGTGATAGTTGGAGGATTGGCTTTAATAATGTTTTCCCCTTTTATGTATAGTAACACAGATTATTATactatatctattttttttcgGCGGCAAATTACAATACACATTTTAGGATTACTATTACAAATACGTAGTGTTTTACTCTATAATGTAATAGAAAGTATTTCTACTTTGGCCATTTGTGAgcgaaataaataaacaaagaaataaaagaataaagacaaaaatgaagaTTTGACTTGCAATGATCAAAGTTCagattcttttttaaaagaaatcttATATCTTTAAATTTCATActtgtaaaatatgtaaaaagaaATTACTGATATGGAAACATATATTATTGATATAAAGcacattatttatatactgtTACCCCAAGTCCATTAACTATGCATAACaaattttgttgtatttttaatttcaaatgccaattttaaaatatagctATAATCAATCACATACCATTGGAAAGATTATTTcgtaaaacattttatgtaaaaatgtttagatCCTTTTCTCAGTTTTTGAAGGAGGTACATGCAGATCATTTCatacactgtatttatatatataaaattttattttattcactgttttatttttgatttgttgGTGCATATTgaacaatatatttttctcagcctttttaagttgttttcttttctttctttaataatcCATAAAAATTAAACTATATATTGCTAACAAAGTCTGACAAATGACAATATAGTAACAAGATGTTGATGACCTGtaatcacaataaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0015734 taurine transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005369 taurine molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403804.2 lncRNA upstream 6420 14760831 ~ 14763174 (+) True LOC113537908
TU364909 lncRNA upstream 170982 14598393 ~ 14598612 (+) True G307976
XR_004580186.1 lncRNA upstream 178773 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA upstream 180362 14589025 ~ 14589232 (+) True G307971
TU364494 lncRNA upstream 621149 14148141 ~ 14148445 (+) True G307588
TU364954 lncRNA downstream 9124 14798973 ~ 14800142 (+) True G308018
XR_003403808.2 lncRNA downstream 603760 15393609 ~ 15407641 (+) True LOC113537967
TU365380 lncRNA downstream 622250 15412099 ~ 15413822 (+) True G308404
TU365421 lncRNA downstream 967041 15756890 ~ 15799890 (+) False dag1
TU365710 lncRNA downstream 1084156 15874005 ~ 15875206 (+) True G308707
XM_026932457.2 mRNA upstream 88733 14674490 ~ 14680861 (+) True LOC113537808
XM_026932459.2 mRNA upstream 88733 14675790 ~ 14680861 (+) False LOC113537808
XM_034313991.1 mRNA upstream 107853 14630530 ~ 14661741 (+) False podxl2
XM_034313990.1 mRNA upstream 107853 14630594 ~ 14661741 (+) True podxl2
XM_026932898.2 mRNA upstream 140987 14616988 ~ 14628607 (+) True mcm2
XM_026932594.2 mRNA downstream 223016 15012865 ~ 15023674 (+) True cand2
XM_026933007.2 mRNA downstream 239285 15029134 ~ 15040134 (+) True LOC113538136
XM_034314013.1 mRNA downstream 255695 15045544 ~ 15062000 (+) False ssuh2.1
XM_034314012.1 mRNA downstream 255722 15045571 ~ 15062000 (+) True ssuh2.1
XM_026932530.2 mRNA downstream 255724 15045573 ~ 15061999 (+) False ssuh2.1
TU364869 other upstream 248447 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 293209 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 2307058 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 3253781 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 3288494 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 1699512 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 1699512 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 2471130 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 3897548 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 3897604 18687453 ~ 18692014 (+) False snrpe

Expression Profile