RNA id: XM_026925529.2


Basic Information

Item Value
RNA id XM_026925529.2
length 3279
RNA type mRNA
GC content 0.46
exon number 27
gene id lig1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10003656 ~ 10034015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTCACTTTGGCGCCGAATTGTTCGCCTTTGAGCGCGCATATTCAGCTACTTCCGCGAATGACGACATTCTACAGTGAAAAATTACTGAAAGTTTAATATTCTGAAGGGATTTTTACTTTGCATTAAACATGCAGCGAAGTATATCGTCCTTCTTTCAGCCAATGAAGTGTAAGGAGAAGGATGGCATGCCCAAAGGGAAATCTGAGTCAGTTAAAAGCCCCCTCAAACCTCAGAATATTGATCAGGAATGTGATTCACCAGTGAAGACAAGTAAGCGGAACCGAGCAATCATAGACAGTGATGATGAAGAGCAGCAGATGGTAAAAGAAGAGGCTTTCCagcaaaatggaaaacaaacagCCACACCAGGCTGTGAGAAGGTTGGCCTTGTTAAGGATACGGCCAGTCCACTCTCACCAAAGCCCCTTGTTACCCCGACAAGTCCTACTGTTTCGGTAGCTTCTGGCACTCCTGAAACGCCTGTTACCCCGAATTCCACTTCACCCTCCTTCATTCCAAAACGCAAGACTGcCCGTAAACAGTTTCCCAAGAGGAAATTGGACGGCAGGAGTGATGAAGAGCgagaaaaagaggaggaaggaaaagagacagagggaggacaGGAGAGTAAACGAGCAAGAATAGAAGGATCTCCTGAAAAGATGGGAATTGATGAAGAGGCTATGGAGGTGGagcaaaataacagaaatactGTGGAGAAAGAACTACTGAAAGCAAAGGATCAGGGAAACATGAATGTGACTAATGctgaaaaagagaataaaaaacaaagtgatGAAAAGGAAACTGAACAGGAAGGAGAGAAGTATGAAGTGAATGGGAACAATAAAGGAATGAAAAAGGTAACGAAGGAGGAAAAATGCAGTCCTGAAAGAGTGATGAAGAAATTGAAGGATGTAGAAGAGGAGAAGATAGAGGGATCTGCTAAGAAAAAAGCCATCAACAGTTTTTTTGCACCCAGAAAAGCTGCAATGAAGCTGGAAAAATCAGAAGAGAAAAGTAATGTAGAGAAGAAGGATGGCGAGAAGCCTGCGGCTGCTACTACTTctgaggagaaagaaaagaagtgTGAGAAGGATGTAGAACCTGCAAACCAGAGCCAATATGATCCTTCTAAAGCTCACTACCATCCCATTGATGATGCTTGCTGGAGGAAGAGGCAGAGAGTTCCATATCTGGCTGTTGCGCGAACCTTTGAGAAGATTGAGGAAGATTCGGGCAGGTTGAGAAACATTGAGACTCTGTCCAACTTTCTGCGATCTGTTATCCTACTCTCTCCAGATGACCTCTTGTgctgtgtgtacctgtgtctGAATCAGCTTGGCCCCGCCTACCAGGGGCTAGAGCTAGGTGTAGGGGAAACAGTACTGATGAAAGCTGTTGCCCAGGCGACTGGGCGTCAACTGGACAAAATCAAGACAGAGGCCCAGGAAAAAGGTGACCTGGGATTGGTAGCGGAGAGTTCCCGTAGCAACCAGAGAATGATGTTTGCACCAGCGAATCTGAGTGCAGTGGGCGTGTTCAGCAAACTGAAGGAGATTGGCAATATGAGCGGAAACTCTGCAATGAATAAGAAAATTGACATCATTAAGGGTCTGTTTGTGGCTTGTCGTTTCTCTGAGGCCAGATACATTGTGAGGTCACTGGCAGGCAAACTGAGGATTGGATTGGCTGAGCAGAGTGTTTTAGCAGCTCTGAGTCAAGCAGTATGTCTGAGTCCACCAGGTCAAGAATTCCCGCCAGCTGTGATTGATGCAGGAAAGGGGATGAGTGCAGACAGCAGGAGAGCATGGCTTGAGGAAAAAGGACTCATCCTTAAGCAGACTTACTGTGAAATGCCAAATTATGATGTCATCATCCCTGTCATGTTGAGGTTGGGCATAGATGAACTGCCTAATCACTGCAAACTTACTCCAGgTGTGCCACTGCGCCCCATGCTGGCCCACCCAACTAAGGGAGTAGGGGAGGTGATGAAAAGGTTTGATGAGGCTGCTTTCACCTGCGAATACAAGTATGATGGAGAGagagcacagATTCACATTCTTGAGAGTGGTGAGGTTCGTATCTTCAGCCGAAACCAAGAGGACAACACCAGCAAATACCCTGACATCATTTCACGGATCCCACAGATAAAGAAGGAATCTGTGCTTAGCTGTGTGTTGGACTCAGAGGCGGTTGCatgggacagagagaaaaagcagatTCAGCCCTTTCAAGTTCTTACCACACGCAAAAGGAAGGATGTGGATGCATCTGAGATTAAGGTGCAGGTTTGTGTGTATGCCTTCGACCTGCTGTACTTAAATGGAGAGtctcTAGTACGGGAGCCATTGAGCAAGCGTCGAGCTTTGTTAAGGAAGAGTTTCatggagaaggagggagagtTTGTCTTCGCTCGTTCTCTCGACTCTAATAACACTGAAACTATAGCAGAGTTCCTGGAGCAGTCCATACGAGACTCTTGCGAAGGCTTGATGGTGAAGACCCTGGAGAAAGATGCCACTTACGAAATTGCCAAACGCTCTCATAACTGGCTTAAGCTGAAGAAGGACTATTTGGAAGGTGTGGGGGATACAGTGGatctgtgtgtgattggtgCATATCTAGGGAAGGGCAAGAGAGCCGGTAGCTATGGGGGTTTCCTGCTTGGTTGCTATGATGAAGAGAATGAGGAGTTTCAGGCTGTCTGTAAGATAGGAACAGGCTTCAAAGATGAAGATCTGGagcagcattacaatttcttaaagGAACACATCCTTCCTAAGCCCCGCCCCTACTACAGAGTGGATCAATCTGCAGAGCCAGATGTTTGGCTGGATGCTGTACAAGTGTGGGAAGTGAAATGTGCTGATCTGTCACTGTCTCCGGTGTACAAAGCAGCAATGGGATTGGTGGACCCAGACAAAGGGATTTCCCTTCGCTTTCCTCGATTCCTTCGCATCAGAGATGACAAGAAACCAGAGGATGCTACTACAGGAGCGCAGattGCTGATCTCTACAGAAAGCAGCAGCAGATTCAGAATCAAGGAGAAAAGGATGATCTAGAGGATTACTACTGATCTCTGCCTTCTGATTGGCTCCTGCAGTCTCAGATTTATTCGCAGCTGTATAAAGTTTAGGCAGACTATTCATGCAGGCTGTATCATTTAATGAttacttttttgtttctgtaattattttaaatgaaagtacAAATCAGAATTGTACATAGGACATAgtctttaaaataaagaaataaacctTTTATAAACTGCT

Function

GO: NA

KEGG:

id description
K10747 LIG1; DNA ligase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376171 lncRNA upstream 63419 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 123900 9878915 ~ 9879756 (+) True G317621
TU376155 lncRNA upstream 127836 9874996 ~ 9875820 (+) True G317618
TU376060 lncRNA upstream 184191 9819266 ~ 9819465 (+) True G317529
TU376057 lncRNA upstream 187999 9815277 ~ 9815657 (+) True G317526
TU376260 lncRNA downstream 71751 10105766 ~ 10106921 (+) True G317703
TU376326 lncRNA downstream 123262 10157277 ~ 10157530 (+) True G317754
TU376333 lncRNA downstream 152291 10186306 ~ 10187126 (+) True G317761
TU376532 lncRNA downstream 470148 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 483573 10517588 ~ 10520208 (+) True LOC117599937
XM_026925090.2 mRNA upstream 14612 9981186 ~ 9989044 (+) True LOC113533165
XM_026925733.2 mRNA upstream 25740 9958993 ~ 9977916 (+) True pip4p1a
XM_026925101.2 mRNA upstream 51336 9943753 ~ 9952320 (+) True dnaaf6
XM_034297745.1 mRNA upstream 142508 9829378 ~ 9861148 (+) False fndc7a
XM_026925570.2 mRNA downstream 8873 10042888 ~ 10053540 (+) True mpz
XM_026925572.2 mRNA downstream 8873 10042888 ~ 10053540 (+) False mpz
XM_026925571.2 mRNA downstream 8873 10042888 ~ 10049764 (+) False mpz
XM_026925209.2 mRNA downstream 27211 10061226 ~ 10130722 (+) True atp1a2a
XM_026925414.2 mRNA downstream 139805 10173820 ~ 10186067 (+) True sdhc
TU376185 other upstream 25755 9959329 ~ 9977901 (+) False pip4p1a
TU375892 other upstream 588492 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1190836 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1734458 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1739595 8263339 ~ 8264061 (+) True G316744
trnar-ucu_12 other downstream 153736 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 502416 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 502416 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 529820 10563835 ~ 10568896 (+) False eif4e2
XR_004580315.1 other downstream 1365869 11399884 ~ 11461068 (+) False per2

Expression Profile