RNA id: XM_034297691.1


Basic Information

Item Value
RNA id XM_034297691.1
length 2837
RNA type mRNA
GC content 0.54
exon number 8
gene id dscamb
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7259272 ~ 7394464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTAAGACTGAGGCAAAGAACTTTGGTAATAACCTTGGTATGAACTAATATCCCAGTCATGCACATtagtgttttttccttttctgacaCACCCATTTTTTCAGTATGAAGGGCTTGATGAGGTGAGTCAGGTGTTGTGGTTGGAGCAACGGAATTCAGAGAAGGGAAACGCAAATATCTAAAGACTTCTCCCAAAATCACCAAGTAAACATGCATCCACTTAGCAGTCTTCATTAACGAGCTGCACATCATTAGTTCAGGTGCCCCTGCACCGATCTGCTCTCTCGCACccttgtaatttatttatttatttatttatttagcgcGCGCGCGGGAGGCGGGAACCTCGGCTCCTTTAAGGCGCTATGGGAGGGATGAGCGGGCCgcggaggaagaggagagaggaaggagCTTTCTTGCCCGTGATGCTGTGAGCCCGAGAGCGCGAGCGCAGCAGAAGCCAACGCGATTAAAGCGGCTGCGGGAGGAGATGCATGCGCGTGCGTGTAGCCTGCGGGACGGCAAGAGGCGCGTGAAGATGGTCTGAGTTCGGCATCCAGCGACCGCACGCTCGCTCCCGCCGCTTCTGCTTTTATCCGGAtttgctttctttccttttccccCCCTGTTTTCccccttggaaaaaaaaaactatgattTATTTACCTTCTTCCATATTCCACacatgcttgtttttattttttctttaaatgcgttttcctttttttcctttccgcCCCCACCCGGTTTGGTTTTCATTTCAATGACACGCAGGAGTGCGTCTTTTTGCCTCTTGGTGTTGTTTCCGAGTTTTCTTTCCCCTTCTTCGTTTTCCCGCTCGAAGCGCGTGGCGCAGAGCCGTTTCCGCCCGTGAACGACCCCGGACTCGGACCCGGACTCGGACCCGGACTCGGACTGGGACTCAGACTCTGCGTCGCAAGCCGCGCAGCACAAACCCGGGACTACACAGGACCGGATCGCGGAAGCGCACGACGCTCGTGCCCGGCGCGCGAGAGCGCGAAGACTGCACACGCCGAGTCACCGAGAACCGCACCGAATCTCACCTTTCCGCCGGCCTAGAGAGGtggcaacaaacaaacaaacaaacaaacaaacacaaacaacagtGGACAAAGTGCGCGGAGTGCGAAGAGGAAGCATAGCTTGGGGATTGAACGGAGCGGGGCATGTGGATATTtgcatttctctttctccagaGCATCTCAAATGtTTTTGGTGAAGATCTACATTCCAGCTTATATTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTCTCCAGCACTACAGGGGCACTGGTGCCGTGTCCGGCAGCGGCCGTGCCCCCCGCTACGCTGCGCTGGTACCTGGCCACTGGGGAGGAGATCTACGATGTGCCAGGCATCCGACACGTGCACCCGAATGGCACACTGCAAATCTACGGCTTCCTCCCCTCCAGCTTTAGTAACCTAATCAATGACAACACCTACTATTGCACAGCAGAGAATCCGTCAGGGAAGATCAGGAGCCAAGACTTGCACATCAAGGCTGTATTTCGGGAACCGTACACTGTCCGTGTGGCGGACCAAAGAGTCATGAGAGGCAATACAGCGGTCTTCAAGTGCATTATCCCAGCCTCGGTAGAGGAGTACGTCACTGTTGTATCATGGGAGAAAGACACTGTCTCACTTGTCTCAGGATCAAGATTTCTCGTTACATCCACAGGGGCCTTGTATATTCTGGACGTGCAGTCAGAGGATGCAGTGAACATCTACCGCTGCACTACGCGGCATCGCTACACAGGAGAGACAAGACAAAGTAACAGTGCCCGATTACTTTTATCAGAACCTGTGGATTCAGCTCCAGTGATTCTGGATGGCTTTGAGAGGAAGGAGGTCATGGTCGGTCATCGGGTCGAGCTGCCCTGTAAGGCTTCGGGTCATCCTCCGCCTCGGTACCGCTGGCTAAAGGACAACAGCCCTCTGGAGTCAGACAGTCGCTACCACCAGAGTGTCTCAGGCCTCCTGATTGAGGCCACCCGACCCAGTGATGGAGGCAACTATGTGTGTGAAGTCTGGAATAGCTTTGGCAATGCCAAGGTGGTGGGACGGTTGGTGGTCAAACAGCCCCTGAAAGCAGTGGTGAGTCCTCGTAAGGTGAGAGGCAGTGTGGGCAGTCAGGTCTCTCTGTTCTGCAGTGTCACTGGCTCTGATGAATATGAAATCACCTGGTACAGAAATGGTGAGAGGATCCAGCCAGGGCCCAATGTCCGCATCACTGGCCTCAGCCATGAGAACCTGGTGATGGAGGGCATGGCCAAGAGTGATGGAGGAGCCTACCAGTGTTTTGCACGCAATGGCAAGATGTCCACCCAGGATTTTGTGCAGGTCATTCTGGAGGATGGAACGCCGAAGATCTTGTCAGCTTTCAGCGAGAAGGTGGTGAGCCCCAACGAGCCAATCTCCCTGGTGTGTCACGTCAAAGGCACCCCACTCCCCAGCGTGACATGGACACTGGATGATGAGCCGGTCATCAAGGACAGCCACCACCGCATGGATCGCTTTGTCACGGTCGAGGGCCACGTGCTCAGCTACCTGAACGTCTCACATACGCAGGTCACCGACGGCGGCGTCTACCGTTGCACCTGCAACAACTCTGCCGGATCGGTCTCCTACCAGGCGCGAATAAACGTCCTGCCAGTATCCGCCCAATGAAAAACCTCACTGCCATCGCGGGGCGGGACATGTTCATTCACTGCCGCATCATTGGCTACCCCTACTACTCCATCAAGTGGTACAAAGATTCCAACTTACTCCCGTTTAACCATCGCCAGCGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374285 lncRNA upstream 129395 7127691 ~ 7129877 (+) True G316000
TU374244 lncRNA upstream 225466 7033565 ~ 7033806 (+) True G315968
TU374158 lncRNA upstream 324095 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 343731 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 364655 6894337 ~ 6894617 (+) True G315886
TU374593 lncRNA downstream 71443 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 150061 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 210068 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA downstream 210068 7565086 ~ 7568068 (+) False G316339
TU374677 lncRNA downstream 227314 7582332 ~ 7590920 (+) False crsp7
XM_034314802.1 mRNA upstream 56072 7145403 ~ 7203200 (+) True atm
XM_034314803.1 mRNA upstream 56072 7155710 ~ 7203200 (+) False atm
XM_034314805.1 mRNA upstream 103043 7145401 ~ 7156229 (+) False atm
XM_026940849.2 mRNA upstream 250534 6997484 ~ 7008738 (+) True meis3
XM_026941503.2 mRNA upstream 276626 6971552 ~ 6982646 (+) True LOC113543373
XM_034314700.1 mRNA downstream 87086 7442104 ~ 7453708 (+) True LOC113543091
XM_034314701.1 mRNA downstream 87086 7442104 ~ 7453708 (+) False LOC113543091
XM_034314702.1 mRNA downstream 87086 7442104 ~ 7453708 (+) False LOC113543091
XM_034314703.1 mRNA downstream 87086 7442104 ~ 7453708 (+) False LOC113543091
XM_034314651.1 mRNA downstream 111615 7466633 ~ 7490001 (+) False brwd1
TU374286 other upstream 123771 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 314664 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1032032 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1362442 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 2039654 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 340516 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 908321 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 913691 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1456939 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 2057305 9412323 ~ 9415164 (+) True G317390

Expression Profile