RNA id: TCONS_00008824


Basic Information

Item Value
RNA id TCONS_00008824
length 2109
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_004223
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32930519 ~ 32932627 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atattactaaggcaaatagttttaatagtcaaaaacaataactatttaaacaaaatatctcatgTCTACATTAAACATAAGTgtttaaaaagacttttaaacTTCATAAATACAATggtacaaagtgtgtgcaatggtaaagcgtAAATACTGAGAAGGCTGTATGTGTGGACTCCTTGACCATTTACAATTCACTTTGCCCTTGCATTTATCTGGCATCTCTCGGAGTATTCGGATAAGTTCAGATGATTTTTAACCTGGTGCGGCTGGAAAATGTGCAATGTGCAAGTCgcacgcctccattggaaatgacaaacctACACCCTAAGCTTaatggcattgcttccaaggcacacggtcagcagccacattttaataaaactatagccttcctgctgaaactttacagaatcttttttttaacagtgttgacaatggtgttcggtcgaTAAATATCAATACCGATTTTATTGCCTGGAACCTTTGTATCCATAGCTATTTGAGGTGTTCCATTTAGTTTACTCCTTTATAACACAATTTCATAAGCTCAACTTTTTCTATAAGGATGTTTAATGCAAAGGTTGTGGAGATCATTAGTTCACTCTTAGAGGTCAGCTTCACACTAGTTGCTACTTCAGTATTGTGACTCATTTCCGACTCAAATTGAGTATAGAATTCGTTATTTTGAGCCACTtcccatttaaaacaattaaaagctgtcaaactgacataaAGAAAAAACATTGACAGCATGTTCTAGAGATTAAGATTAATGATTACCAAGTCAACCACTGTACACTATGTGTGCTATTTCTACTCTAAGACCATGTTCGtttgaaatacatattttttttctctccgttGTGGCCTTCTGTTCACACTGAGATGACATTTTTAGTGAACAAAATAGCATATTTTGGAAATTGCTGTACAAAGTGGATGCATTTGAAAATGCTGTTTTCATATTGCAGTGTGGACTGTGAAAATGGAGACTTTCAAAAACGATGTCGCATTTTAGTCGTGTGACCAATTGTGCTACAGTAACATTGTTGATGACATTGTAAAGCAGTTGTTTTGGATGCTGTCCATTTTGGCAGCTTTATTAAAGACTAATGTCAGTTTGTACGTGCTTCATATCGCCTCTTATTAAAAGACACATTATGTTTACTTAGATTTGTGAACCTGTCCTTACTGTAGGGGTAATCAATGTCATCAACAGGGTACTGATCATTGAATTAGCTCAATATTTCGCCGCATTTATTTTGGCCCGTCTTCAGATCAACATATAGACAAATTTTTGCAACTTTATATTCTTTTGTTACTCTCAACCAAAGATGAAGTTTTCCTGTTGATATTGTTTGGAGTCTAATATTACTACAGGTTGCTATTTTTGTGGACTCGTAGTGAACTTGACTTCTAGTGACTTTTCTTTGAAAGCAGCTCCTTATGTCCATGTCTGACCTGAGTCTTGTAAACTTATTTAAAGCCTGACTGGAGAATTTCCTTGCAGTTTTGGCACTGAGCATCCAAATGTACCATAGCAGCCGCTCACTGCATGGAAAGACACAGCCAATCActgttcatgtgtgtttggtgGAGGTAGAGCTCGTGGAGAGCACTTTAATTAACTCTTTCTGTACATTTGTGTAAATGAGAGGTGAAagagaaatattttatttttgaggtgactaaattattggtggggacatttcagtaatcaGTGGACATGCTAATTCTACCCTTTCTCTCAACAACAACCACTTTCACTGTCAGTCCAtttaaagaaatctgtgattTGCTTCCAATTTTGCCACAACATTTCAAAGAgatggaaagtaaataaatggCAAGTGAATAAGATGCAGGTAAAAGTGTCTTACATCAGTGCGCATGCGCAGTACATGAACAAAATTGTTTAGtgttaatgacttttttttttaaaacaattaaaatgatagTGTGGACATGTATGAGTTTTCAAATGTATCTGGATAAGTGTAGACAAAGTTTAAAACAGCATTGAATAAGTACATTTGTATGTAAATAGGGAAGCACTTGGTGTAATCGACTGTGTCTTTTTCAAATATACAGCTTTTGCTTTTAATGCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008821 lncRNA downstream 1848 32809971 ~ 32928671 (-) False XLOC_004222
TCONS_00008822 lncRNA downstream 1848 32825636 ~ 32928671 (-) False XLOC_004222
TCONS_00008073 lncRNA downstream 366797 32467184 ~ 32563722 (-) False XLOC_004218
TCONS_00008820 lncRNA downstream 366797 32535904 ~ 32563722 (-) True XLOC_004218
TCONS_00008819 lncRNA downstream 366815 32535904 ~ 32563704 (-) False XLOC_004218
TCONS_00008825 lncRNA upstream 144 32932771 ~ 32942872 (-) True XLOC_004222
TCONS_00008826 lncRNA upstream 44655 32977282 ~ 33064553 (-) False XLOC_004224
TCONS_00008476 lncRNA upstream 45327 32977954 ~ 32982868 (-) True XLOC_004224
TCONS_00008478 lncRNA upstream 230553 33163180 ~ 33179795 (-) False XLOC_004225
TCONS_00008477 lncRNA upstream 230553 33163180 ~ 33179795 (-) True XLOC_004225
TCONS_00008074 mRNA downstream 206668 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1057891 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 1654439 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 1654455 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008069 mRNA downstream 1703941 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008079 mRNA upstream 665586 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 665987 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 913813 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 928550 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 931641 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008075 other downstream 192926 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 1758265 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 2421728 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 2565695 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 2774684 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008078 other upstream 438624 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 1033531 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 1422917 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 1533768 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 2292395 35225022 ~ 35225139 (-) True XLOC_004254

Expression Profile

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