RNA id: TU425115


Basic Information

Item Value
RNA id TU425115
length 3220
RNA type TUCP
GC content 0.46
exon number 5
gene id c25h16orf87
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2321124 ~ 2386730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATAGAGACAGAGGAAATATCAACAGCATGTTCTTGGTTACTGTATCTTTTTTTAGCCGCACTGCGCATGTGCAGTGTgaataatgtggaaaatgaGCTGtagccttttttcttttagggTTTCGGGCGCTGATTGAtggtttatgtatgtgtgtgtgagtgtgtgagtgtgtgaatgcgcGTGCacgcgtgtgtgagtgtgtgtgtgtgtgagtgagtgagtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagtggctgATATTACAGGCAAAGGATCGACTTGATTATTCCGTCCTCCACATTTtggacttttttaaaattttaaaacccAAAATAATGTCCGCAAATAAAGTGAAGAAAGTGAAAATGGCTACCAAATCGTGTCCGGAATGTGACCAACAGATCCCTGTGGCCTGTAAGTCGTGCCCTTGTGGTTACGTCTTCATCAGCCGAAAGCTGCTCAGAGAGCCGCCTGCTATAGACAAATCGGACGCGAAAAGAAGACGACCGGAAAGAATAAGAAGGGAAAAGATCAACTTAACGTCCACCAATGATATGGAGAACAGGAGGCGGTCCCGctccaacagccaatcagatacCATCCGGAGGGGGCGGGGCAGGCCGAAGACCGTGGGATTGAagaagcaggaggaggagaaagAAAAACAGGAGCGGGAAGTCGATATTTACGCCAACCTGTCGGACGAGAAGGCTTTCGTGTTCTCCGTGGCCTTAGCTGAGATCAACCGCAAGATCCTGGGCCAGAGACTGATCTTGtaagggggcggagctacagATGATTGCCAGGTGAAAGTTCAGGACTCGTATTGCATGGCCCTCCGGGTGATGTGTGTATCTGGGAGGAAGGCGTGAAGTCGGGACTGGTGAGCGTCTCACTCGGGCGGCTGATGGTTTGTGGAGTCACACGAGGACGAGGGAACGGTGACCGTGGCGATtctttaaatattgtaaacatgGACATGTAGGAATCTTCTCTATTTATctttaaacagattttatggAATGTATTAAAgaaggagtgttttttttttctcttttatccaAGTTGTGATTTGTCAACACAATGCACACGTTCTCattcacatcatacttttttttttttttggctattttttttaaaagatcaaCAGGGTTTTTTAGTCATGATGAAACgtagtaaaacatttttaaggTATTAAAAGAGTAGTTAGGCcaaaaatgatatttacatAATTCAACCAGCTGAGACTTGTTTAGATTTGAGaagtgtctgaagtttgcttctcgTACTTTGGCTAGAGGTAGCTAAGTTGAGggaagcttatagctaccagATTAGCATCACGCACACACGTTAAAAGACGTCAATTAACTCATCAGTGCCATTTTTTGACACAAGCATGAGAAAATATAtccatattaaatatataaaaaacaaatttgaaCTCAGTCGTCAATCTTTGGGCCCGCCCTCTGCTTGAGGGTTTGAAATGGAGCTGcgactggttttttttttttaagctctgcACCATCCGTTGGtacgttttttttaataaataacagtgtCATGCAGTGTgagaaaccacatcagcaaaGTCTGAGGATTTAGACATGGAGGCTATATGTTTTCCTTACTTTAGCTACACTAgccagtgcaaaattaaagaagcaaatttCACCAAATAtgtttcagctacttgtattttttatttgctgaaCTTTAACTTTGAAATGCAACAAATGTGAAATATTGAGATTGCTATAAAGGCCCTGTTTACATCTTCCATTAACGAGCATTTCTTCTAATCCAGTTACGATTGTGCAGCATGTCCGACTGGAGACAAGTGTGAACTTGACTGGAGATCCTCCAGAGGTCTGGTTCGAGCTGTGATTGTACTGTGTGTTCTCATTTATTCCATAAAACCAGAATACAGAACCTGAGGGAGATCATTTATATcctaaataacatatttatatattgtggAAGAGAAATGGGATGTAGCACAAGAAAGAGATTGGATTTGGTCAGTAGTGTGTGGCTGCAGTCCCACAGAGTGACGACATAAGAAGGAAACCCCAGACTGGACGGAGGAAGCCCCTGCTTGGGCAGAGGAAGCCCCAAACTGGACAGAGAGAACCCCTGCTTGGGCAGAGGGAGCCCCACACCAGACAGAGAGGATCCCTGCTTGGGCAGAGGGAGCCTCACAGTGGGCAGACATAACTCTTGCTTGGGCAGAGGGAGCCCCACAGTGGACAGAGAGAACCCCTGCTTGGGCAGAGGGAGCCCCACAGTGGACAGACAGAACTCTTGCTTGGGCAGAGGGAGCCCCACAGTGGACAGACAGAACTCCTGCTTGGGCAGAGGGAGCCCCACAGTGGACAGACAGAACTCCTGCTTGGGCAGAGGAAGCCCCACACCAGACGGAGAGAACCCCTGCTTGGGCAGAGGAAGCCGCAGACACGCAGCCTGGACATACGGAGCCCAACACCAGACGGAGAGAACCCCTGCTTGGGCAGAGGAAGCCGCAGACACGCAGCCTGGACATACGGAGCCCAACACCAGACGGAGAGAACCCCTGCTTGGGCAGAGGGAGCCCCAGACCAGATGTAGGGAGCCCCATACTGGATGGTGAGAACCCCTGCTTGGGCAGAGGGAGCCCCACACCGGATGGAAGGGGCCCCTGCTTGGGCAGAGGAGGCACCAGTTCAAAGTCCATCTTTCCTGCATTCTTTCACACTTGTGCCCAGCGTGAGGCTTGCTCTGTGGGGCTGCGCCTGAGTGTCGTTTACTCGTTCATTATGAATGTTAATTTAAGGCGTAAACAGGGCCGTAAAGTACTGAGTGCACAAGTTAAGTGTTCTTCATCCAGGTCACAGATCTAAACATTTCCAAAGAGTGCTCCGTATATCAGATGGCTGATGTCTCACACCGAGCTTGTTGAAAGCTGAACaactacttttttatttattttaaacgtTCCGGTGAGCCATTCTGCTTTGTAAATGCAACTGATCAAAAAGTGGGTGGGGACTCTGAAGCTAATACTGGGGAACGAACTTTATTTATTGGTGCTTTTCCACTCTAATTTAAGTGCATCTTCTATTTTATGGccttttattaatgtttatttcacaaatgGTTAAAGTGTACATGTGTAATAATCACCACGATTATATTAAACATCAGAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425171 lncRNA upstream 127748 2193163 ~ 2193423 (+) True G358858
TU425144 lncRNA upstream 317457 1997203 ~ 2003714 (+) True G358834
TU425132 lncRNA upstream 340577 1980220 ~ 1980594 (+) True G358828
TU425086 lncRNA upstream 392858 1925808 ~ 1928313 (+) True G358796
TU425010 lncRNA upstream 605284 1715546 ~ 1715887 (+) True G358726
TU425217 lncRNA downstream 27925 2366683 ~ 2366926 (+) True G358902
TU425218 lncRNA downstream 46540 2385298 ~ 2387176 (+) True G358903
TU425219 lncRNA downstream 46540 2385298 ~ 2387176 (+) False G358903
TU425220 lncRNA downstream 46540 2385298 ~ 2387176 (+) False G358903
TU425227 lncRNA downstream 95323 2434081 ~ 2434290 (+) True G358908
XM_026937615.2 mRNA upstream 22656 2287070 ~ 2298515 (+) True dnaja2a
XM_026937401.2 mRNA upstream 117573 2177978 ~ 2203598 (+) True LOC113540805
XM_034299457.1 mRNA upstream 146202 2020720 ~ 2174969 (+) True itfg1
XM_026937736.2 mRNA upstream 887853 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA upstream 887853 1303881 ~ 1433318 (+) False cdh8
XM_026937382.2 mRNA downstream 9063 2347821 ~ 2384488 (+) False mylk3
XM_026937380.2 mRNA downstream 15131 2353889 ~ 2384488 (+) True mylk3
XM_034299853.1 mRNA downstream 53698 2392456 ~ 2431492 (+) True vps35
XM_034299458.1 mRNA downstream 95875 2434633 ~ 2435076 (+) True LOC117596027
XM_026937424.2 mRNA downstream 131357 2470115 ~ 2504561 (+) True slc7a10a
XR_004577234.1 other upstream 416580 1890574 ~ 1904591 (+) True LOC117596061
TU424567 other upstream 1882285 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 1969402 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 1969402 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 1969402 348769 ~ 351769 (+) False ccne1
TU425321 other downstream 297531 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 1384268 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 1403028 3741786 ~ 3745457 (+) False cylda
XR_004577248.1 other downstream 2247854 4586612 ~ 4764886 (+) False fto
XR_003404141.1 other downstream 3670835 6009593 ~ 6009707 (+) True LOC113541027

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU423710 True 1450 lncRNA 0.42 1 NC_048569.1 16218323 ~ 16219772 (-)
mexican tetra (Astyanax mexicanus) TU423710 True 1335 lncRNA 0.48 5 NW_019172849.1 400293 ~ 419722 (+)