RNA id: TCONS_00008971


Basic Information

Item Value
RNA id TCONS_00008971
length 2287
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_004491
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5048044 ~ 5071836 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAAGGAGTTTATACGGAAGTAGTGATGCATTGAATtgagtaatttttaaaaaacacactcacaTTGTACCCGAGTGTGAATTATATATCGTTCAAGAACTGGATTAGCCGCTGCACAAGTGAAGAGAAATGGCACAGCGTGTTGCTGTGAACGATGGAGCTGCTGGATCCAAACGCACCTCTCGTGTTCGAGTGGCCGTCCGGCTGAGACCCTACATGGACAAGCAGGACGAGAAGAGCGAGGGCTCCTGTGTGCGGGGTCTGGGGCCACAGAAGCTGGAGATCATCAACTGGAGGAACGCCACTGAGACCCTGCAGTACCAGTTTGATGTGTTTCATGGTGAAGAGACCACACAGCAGGAGGTGTTTCTGACCTCCGTCAAGCCAATCCTCCCACACATCCTCAATGGTCAGAATGCCAGTGTCTTTGCCTACGGACCCACCGGAGCAGGAAAGACCCACACCATGCTGGGCAGTCAAGAGCAGCCAGGCGTTATTCCCAGAGCTGTAAAGGAGGTCTTCAATCTGGTTGGAGCTCAGAAAAAAGAGCAAGATGGTTGGGAGTACTCCATTGGGATGTCTTACTTGGAAATCTACAATGAAAAGGTGCTGGATCTGTTGTCCCCAGGTTCCCAGGACCTGCCCATCCGTGAAGACAAGGACAGAAACATCCTCATTCCCGGGTTAACACACACTCCTCTCTCATCTTTTGCTGATTTTGACACTCATTTCATCCCCGCGAGCCTCAACCGAACCACAGCCTCTACTAAACTCAACCAGCGCTCCAGCCGCAGTCACGCCATCCTCCTCATAAAGGTGGTGAAGTCTCAGCGTGGTCCGCCACACAGACAGCAAACAGGAAAGCTTTATTTGGTGGATCTTGCCGGTTCAGAGGACAATCGGCGCACAGGAAACCAGGGCATTCGTCTGAAAGAGAGCGGAGCCATCAACTTGTCTCTGTTCACGCTCAGTAAGGTGGTGGACGCTCTGAACACAGGGGCTGGGGGCCGCGTGCCCTACAGAGACAGTAAACTCACCCGCCTGCTGCAGGACTCTTTGGGTGGATCCGCACATTCTGTCATGATCACAAACATCGCACCCGAGTACAAATACTACTTTGACACCTTTTCTGCACTTAATTTCGCCGCAAAGTCTAAGCAGATTGTCAATCGGCCTTTTGTCAGAGAAACTGTTTTGGCCCCTACGATTGCTCCTGGAAAGAGAACCAGAGAGGAACAGGAGGCTGGAGGTTCTGGTGAACCCCAGAACAAGAGATCCAAAGAAGGGAAGAAAGCTGAACATTCCCCATCACCGCCCTTACATCCACAGAGTTCACCAGATTCATCAGTTCTGGACCGACTCCTGGCTCTGGAGAAGATGATGATGGGCTCAGCTGAGAGGGAGAGACTCAACCTGCTCAAAACTGTTGCACAGTCCCGAAAAGAAATCCAGATGTTGAAGGAGAAACAGAAGGAGCTGGAGGACAAAGCCAACATGTTTAATAAGCAGAAAGAAACCACTGAGAAAGAGTCCAAAGATGCTCTTCTTTTCAAGACCGATCTGCCGCCCCTACACAGAAAACAGTCGACAGCCGCCAAACCACGCAAACAGCAGGCCGTTGTTACTCCATTACAGGTGTCTCAGGTGCAGCCCTTACAGCAGTGTGCAGTGGTCTGCAAACCCTCACAGACCTTGGTTAAGAAGAAACGTGTCCAAACGGAGGTGTGTGATGGAAAGGAAAACATAGGTGTGGATCTTCATCCTGTTGAAGATGTCAACTGGGAGTCCCGTCTGGATCCAGCATTACTGGAACAGTCCAGGAAGAAGATCCTGCAGACGCTCAACTCGGGCTCTCTGAAGGAGCTCAAGAGCCTGCAGCAGATCGGAGACAAGAAGGCCAAACTCATCATGGGATGGAGAGAGATTAATGGAGACTTCACACAGgtGGAAGACCTGAAGAAAATCGAAGGTGTTACAGTTAAACGATTCTCTTCTTTCATAAAGgCCAATATTCTCAGCAGTATGGGAAAGTGAAGCAATTTGAGCTGCTGTGACTGAAGAGGAGAGCCTGCATACTTGTTTTTAcatgtgttttatggatataatGTGTacagtttttaaacttttttttttctttgtgtataCTTGACTGCTGTTtttcttgttttcatttttcagtgaatTTCCTGCATACCTAGGccaattttttcttttatttaactttttaatctGTAAATGAACCTGTTTCATTTCATAAAGGCACTAAATAAATGCCATCATCACATA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048592 eye morphogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0007409 axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko04914 Progesterone-mediated oocyte maturation
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-080204-34 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including central nervous system development; somitogenesis; and thigmotaxis. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 2. Orthologous to human KIF22 (kinesin family member 22).

Ensembl:

ensembl_id ENSDART00000172607

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010880 lncRNA upstream 212760 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 296222 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 313086 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 574926 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 597622 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010719 lncRNA downstream 909428 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00008994 lncRNA downstream 969742 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 969757 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 972163 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 1072869 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008969 mRNA upstream 3143 4971515 ~ 5044931 (+) True XLOC_004490
TCONS_00008968 mRNA upstream 84921 4920451 ~ 4963153 (+) True XLOC_004489
TCONS_00008967 mRNA upstream 85192 4920451 ~ 4962882 (+) False XLOC_004489
TCONS_00008966 mRNA upstream 141150 4900981 ~ 4906924 (+) True XLOC_004488
TCONS_00008965 mRNA upstream 154582 4869248 ~ 4893492 (+) True XLOC_004487
TCONS_00008976 mRNA downstream 9923 5081759 ~ 5095774 (+) True XLOC_004496
TCONS_00008978 mRNA downstream 30834 5102670 ~ 5113389 (+) True XLOC_004498
TCONS_00008979 mRNA downstream 57409 5129245 ~ 5154099 (+) True XLOC_004499
TCONS_00008980 mRNA downstream 117940 5189776 ~ 5204629 (+) False XLOC_004500
TCONS_00008981 mRNA downstream 118213 5190049 ~ 5194256 (+) True XLOC_004500
TCONS_00008960 other upstream 550595 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008894 other upstream 4526252 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008977 other downstream 17979 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00009009 other downstream 1636293 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 2348196 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 2489229 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 2660698 7732534 ~ 7732650 (+) True XLOC_004523

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_03163127_03175326.mRNA True 2183 mRNA 0.49 13 CI01000047 3162866 ~ 3175326 (-)