XLOC_004507 (si:ch211-131k2.2)


Basic Information

Item Value
gene id XLOC_004507
gene name si:ch211-131k2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5977777 ~ 5981577 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008991
ATGGAGATTTGGAAACTGTCAGCATTAATGCTCACTTTACTCGCTCTCGCCTACAGCGTTGAAGGATTCTCTTTCTCTCTAAACAGAGACAACTGGATGTCTGATAACTGGGAGGATGAGCCGATGGAGGAGACATTAGCCAGTCAAGTGGCCAGTCTGTTGAAGAGATCCAAATCTCATCAGTTTTATGGGTTAATGGGGAAACGCTCAGAAGTCCTTCAGCCTGTAAAAATGGAGCGAAGAAGGCACAAGGGTGATATGTTTGTAGGACTCATGGGAAAGAGATCTTTAGGAGGTTCTGGCACAAGAGCAATCCCAGAGACGAGTACAGCAAAATCTGCAGCTCTGAACAAACGGACAGCAGATCTGCAGGAGGAATGGGACAGACTTCAGTACTGACGACCTCACAGACGTCTAAAAACACAGTTATTCTTCACTCTTAACATTGTACTCCAGGGAAACTGGGAgtatacacacacaagcaaatgTCTTGCTGGGATATCAAATAAATGGCGTAATAAAAGTATTTATCAAAATG
>TCONS_00010719
ACAAGAGCAATCCCAGAGACGAGTACAGCAAAATCTGCAGCTCTGAACAAACGGACAGCAGATCTGCAGGAGGAATGGGACAGACTTCAGTACTGACGACCTCACAGACGTCTAAAAACACAGTTATTCTTCACTCTTAACATTGTACTCCAGGGAAACTGGGAgtatacacacacaagcaaatgTCTTGCTGGGATATCAAATAAATGGCGTAATAAAAGTATTTATCAAAATG

Function

symbol description
si:ch211-131k2.2 Predicted to enable substance P receptor binding activity. Predicted to be involved in inflammatory response; positive regulation of cytosolic calcium ion concentration; and tachykinin receptor signaling pathway. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0006954 inflammatory response biological_process
GO:0005615 extracellular space cellular_component
GO:0031835 substance P receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-81 Predicted to enable substance P receptor binding activity. Predicted to be involved in inflammatory response; positive regulation of cytosolic calcium ion concentration; and tachykinin receptor signaling pathway. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000096645

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008991 False 538 mRNA 0.44 6 5977777 5981577
TCONS_00010719 True 235 lncRNA 0.42 2 5981264 5981577

Neighbor

gene id symbol gene type direction distance location
XLOC_004506 LO017821.1 coding upstream 167498 5775853 ~ 5810279 (+)
XLOC_004505 dlx3b coding upstream 265857 5708400 ~ 5711920 (+)
XLOC_004504 ace coding upstream 395717 5530247 ~ 5582060 (+)
XLOC_004503 drd6b coding upstream 517574 5458462 ~ 5460203 (+)
XLOC_004502 plce1 coding upstream 579199 5251647 ~ 5398578 (+)
XLOC_004508 si:ch211-131k2.3 coding downstream 21138 6002715 ~ 6006865 (+)
XLOC_004509 g6pca.2 coding downstream 59998 6041575 ~ 6048286 (+)
XLOC_004510 sgms1 coding downstream 84084 6065661 ~ 6114296 (+)
XLOC_004511 asah2 coding downstream 136105 6117682 ~ 6142673 (+)
XLOC_004512 NA coding downstream 163128 6144705 ~ 6152579 (+)
XLOC_004497 AL929469.3 non-coding upstream 887847 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 916080 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 920421 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 925199 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 926080 5051562 ~ 5051697 (+)
XLOC_004513 NA non-coding downstream 167430 6149007 ~ 6153121 (+)
XLOC_004514 NA non-coding downstream 175386 6156963 ~ 6171928 (+)
XLOC_004515 NA non-coding downstream 213593 6195170 ~ 6451609 (+)
XLOC_004517 CU184911.1 non-coding downstream 726552 6708129 ~ 6708243 (+)

Expression


Co-expression Network