XLOC_004506 (LO017821.1)


Basic Information

Item Value
gene id XLOC_004506
gene name LO017821.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5775853 ~ 5810279 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008990
atgtttgaaaccaccaggactcttcctagaaaacaaattgtctggtttgatgagactaaaattgaactctttggggtgaatgccaggcggtgttacgtttggagaaaaccaggcaccgctaacgccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagcagcaggaactggaagactagtcaggatagagggaaagatgaatgcaggaacgtacagagacatcctgaatgaaaacctgcttcagagtgctcttgacctcagactggggcgacgattcatcttccagcaggacaatgacccaaagcacactgccaaaatatcaatggagtgtcTTCACAACAATTTGGtaaatgttcttgagtggcccagccagagcccagatctaaatcctattgaacatctctggagagatctgaaaatggctgcacactgtcgcttcccatccaacctgactgagcttgagaggtactgcaaagaggaatga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112024

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008990 True 507 mRNA 0.47 4 5775853 5810279

Neighbor

gene id symbol gene type direction distance location
XLOC_004505 dlx3b coding upstream 63933 5708400 ~ 5711920 (+)
XLOC_004504 ace coding upstream 193793 5530247 ~ 5582060 (+)
XLOC_004503 drd6b coding upstream 315650 5458462 ~ 5460203 (+)
XLOC_004502 plce1 coding upstream 377275 5251647 ~ 5398578 (+)
XLOC_004501 SLC35G1 coding upstream 551076 5209822 ~ 5224777 (+)
XLOC_004507 si:ch211-131k2.2 coding downstream 167498 5977777 ~ 5981577 (+)
XLOC_004508 si:ch211-131k2.3 coding downstream 192436 6002715 ~ 6006865 (+)
XLOC_004509 g6pca.2 coding downstream 231296 6041575 ~ 6048286 (+)
XLOC_004510 sgms1 coding downstream 255382 6065661 ~ 6114296 (+)
XLOC_004511 asah2 coding downstream 307403 6117682 ~ 6142673 (+)
XLOC_004497 AL929469.3 non-coding upstream 685923 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 714156 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 718497 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 723275 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 724156 5051562 ~ 5051697 (+)
XLOC_004512 NA non-coding downstream 334426 6144705 ~ 6152579 (+)
XLOC_004513 NA non-coding downstream 338728 6149007 ~ 6153121 (+)
XLOC_004514 NA non-coding downstream 346684 6156963 ~ 6171928 (+)
XLOC_004515 NA non-coding downstream 384891 6195170 ~ 6451609 (+)
XLOC_004517 CU184911.1 non-coding downstream 897850 6708129 ~ 6708243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G189386 NA non-coding NC_047606.1 CM018552.1 1919470 ~ 1923367 (-)
bowfin (Amia calva) G60101 NA non-coding CM030127.1 CM030127.1 5165267 ~ 5165488 (-)
tiger barb (Puntius tetrazona) G50729 NA unknown NC_056705.1 CM032074.1 5687790 ~ 5720325 (-)
mexican tetra (Astyanax mexicanus) G55770 NA non-coding NC_035902.1 CM008305.1 31728742 ~ 31730248 (+)