XLOC_004514


Basic Information

Item Value
gene id XLOC_004514
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6156963 ~ 6171928 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010883
ctcatcgtcatgttcaagaaaccagtctgagatgatttgtgcatttttgacatggcacgttatccagctgaaagtagccatcagaagatgggaacactgtggtcataaagggatggacatggtcaacaactcttctcagTCTCCTCTGTGGTGGGCAACATCAGATTACGAACATAGAGAATCTTCACTGTGGCCATGGTGTCCTCGTCTACCTCCACTTCAGGTTCAGCCCAGTCGACTGCAATAGGATGACCCCACAGCTGAATCCTTCCtggaaagagaagaaaaaatggTGTTGGTGGCTGGTCTTTTTTATCTCTCACTCATCTCTTCTGGGCAATGAACTAAGTATCTTTGGACCCAACATGAGTTCAGCCTGAGGGAAATCAATAAAACCATGCCTTGTTCTGGAAACTGATAATTGCCTTGAAATGTGTCAGTACATTGGGAACAGACGTGGAAGTGCTTTCTGGGCAAGAAAACTAGGATAATATCAAATGGagttgaacatttttttgtttgtatttttgtttcaCCTGGGAGCAGTTTCCTCCTGGCCATGGCGGCAGCTCTGTGGGTCTCATATTCCACAAATGCAAAACCTCGGTTCTTGGCCTTGTCAGCAGCACTTGGGTAAACGATGACATCCAAGACACCATCCGTCACTTTCTTCATCTCTGCCAGGATCTCTTCTCTCTTTTTGGTTTTTGGAATACCACCCACAAATAGACGACAGTTGTCTACACTTGCACACACGCCCAGAAGCCTTCCATTCCTGCATGAAGATGTGTGAGAACTGTCAGTTTTCTGGTCAGAAAATGCTTTTTCAACTACTGTAGATATCCAATGACTCACCGGATTTCATAGTTGTTGAGCTGTTTCATGGCATTCTTAGCTTCTTGTTTTGTGGAGAAGGTAACGAATGCATAGCCTCGATTGTTGCCATTGAAGTCCATCATCATCCGTACTTCGTAAATTTTGCCAAACTGTAAAGAAAGGTAAGTGTAACTATAAATTCACTGCATTCAAATGTCTTAG
>TCONS_00010884
aggacaccggccctccagggccgagtttggacacccctgccttagccctacgccttcaagctatagagaattgggacactcctaccccttcacgtgaatccACAAaacaaggggaagggctaaggggtagaattgggattggctttgggtgaactgttcctagAAGTAATAAACTTGAATGCACAACCTTGTTGTAACACCTCAAATCATACTGCATATTAGAGAAGAAGGGTCTTCTTTACATTTTGAGGTCTTTCACACCTACCTATTTTCACCTGGCAGTTTATTGAATGAGTGTAAAAAGTTCTAAACACTTGCATTAAAGGTCTGTCCTGAGCGTTAACAAGAtcataatattaaatgtttttgtccagaatattaaacatttttggcAACTCACCAGGTTTGATGCTATTGAACTCTTTTTCAATAGTCTCCTCTGTGGTGGGCAACATCAGATTACGAACATAGAGAATCTTCACTGTGGCCATGGTGTCCTCGTCTACCTCCACTTCAGGTTCAGCCCAGTCGACTGCAATAGGATGACCCCACAGCTGAATCCTTCCtggaaagagaagaaaaaatggTGTTGGTGGCTGGTCTTTTTTATCTCTCACTCATCTCTTCTGGGCAATGAACTAAGTATCTTTGGACCCAACATGAGTTCAGCCTGAGGGAAATCAATAAAACCATGCCTTGTTCTGGAAACTGATAATTGCCTTGAAATGTGTCAGTACATTGGGAACAGACGTGGAAGTGCTTTCTGGGCAAGAAAACTAGGATAATATCAAATGGagttgaacatttttttgtttgtatttttgtttcaCCTGGGAGCAGTTTCCTCCTGGCCATGGCGGCAGCTCTGTGGGTCTCATATTCCACAAATGCAAAACCTCGGTTCTTGGCCTTGTCAGCAGCACTTGGGTAAACGATGACATCCAAGACACCATCCGTCACTTTCTTCATCTCTGCCAGGATCTCTTCTCTCTTTTTGGTTTTTGGAATACCACCCACAAATAGACGACAGTTGTCTACACTTGCACACACGCCCAGAAGCCTTCCATTCCTGCATGAAGATGTGTGAGAACTGTCAGTTTTCTGGTCAGAAAATGCTTTTTCAACTACTGTAGATATCCAATGACTCACCGGATTTCATAGTTGTTGAGCTGTTTCATGGCATTCTTAGCTTCTTGTTTTGTGGAGAAGGTAACGAATGCATAGCCTCGATTGTTGCCATTGAAGTCCATCATCATCCGTACTTCGTAAATTTTGCCAAACTGTAAAGAAAGAGTGGCACCAGCTCATCCTCAAAGAGGTCTCGAGGAAGCTTTCCCACAAAAATCTCACTGCCTCTTTCGGGAGGTGAGCCTTCCCATCCAGGAGGTGGGCCACCGTATCTCCTCTGGCCATTTTCCTGAGGAGGAAACAACTGTGATGACTCTATAATACAAGTTAATAAATACACTGAGATGACCAGAAGGTACAGTCATAAAAGATAGCGATAAATGATATGTTGATACTATAGATGACAAGGCAAATCATTCTACTGATCCTTATGTTTCATTTGTTTGCAGATGGCAAAGAGATTTTCTATCTTTGCCACATGAGGGTGCCACTACACAACACACTTAAAGCTGCTAAAGATAACAAGACAGATAAACAGTCAGAATATTCCCTATAATTAAACAAAATGGATCTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010883 False 1038 lncRNA 0.43 2 6156963 6170913
TCONS_00010884 True 1704 lncRNA 0.42 2 6169582 6171928

Neighbor

gene id symbol gene type direction distance location
XLOC_004513 NA coding upstream 3842 6149007 ~ 6153121 (+)
XLOC_004512 NA coding upstream 4384 6144705 ~ 6152579 (+)
XLOC_004511 asah2 coding upstream 14290 6117682 ~ 6142673 (+)
XLOC_004510 sgms1 coding upstream 42667 6065661 ~ 6114296 (+)
XLOC_004509 g6pca.2 coding upstream 108677 6041575 ~ 6048286 (+)
XLOC_004515 NA coding downstream 23242 6195170 ~ 6451609 (+)
XLOC_004516 dkk1b coding downstream 293629 6465557 ~ 6467675 (+)
XLOC_004517 CU184911.1 coding downstream 536201 6708129 ~ 6708243 (+)
XLOC_004518 tfam coding downstream 1082184 7254112 ~ 7263958 (+)
XLOC_004519 bicc1b coding downstream 1227475 7399403 ~ 7429824 (+)
XLOC_004497 AL929469.3 non-coding upstream 1067033 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 1095266 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 1099607 5057221 ~ 5057356 (+)
XLOC_004520 FP102277.2 non-coding downstream 1248104 7420032 ~ 7420148 (+)
XLOC_004522 FQ311940.1 non-coding downstream 1389137 7561065 ~ 7561202 (+)
XLOC_004523 CABZ01050061.1 non-coding downstream 1560606 7732534 ~ 7732650 (+)

Expression


Co-expression Network